SELECTED PUBLICATIONS
• Ruiqing Zheng, Min Li*, Zhenlan Liang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. Bioinformatics. DOI: 10.1093/bioinformatics/btz139
• Xingyi Li, Wenkai Li, Min Zeng, Ruiqing Zheng, and Min Li*. Network-based Methods for Predicting Essential Genes or Proteins: A Survey. Briefings in Bioinformatics. 2019, doi:10.1093/bib/bbz017
Min Li, Li Tang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. SCOP: a novel scaffolding algorithm based on contig classification and optimization. Bioinformatics. DOI: 10.1093/bioinformatics/bty773.
• Ruiqing Zheng, Min Li*, Xiang Chen, Fang-Xiang Wu, Yi Pan and Jianxin Wang. BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks. Bioinformatics. DOI: 10.1093/bioinformatics/bty908.
Min Li, Hao Gao, Jianxin Wang and Fang-Xiang Wu. Control Principles for Complex Biological Networks, Briefings in Bioinformatics, 2018, doi:10.1093/bib/bby088
Min Li, Zhihui Fei, Min Zeng, Fang-Xiang Wu, Yaohang Li, Yi Pan, and Jianxin Wang. Automated ICD-9 Coding via A Deep Learning Approach. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2817488
Min Li, Li Tang, Zhongxiang Liao, Junwei Luo, FangXiang Wu, Yi Pan, and Jianxin Wang. A noval scaffolding method based on contig error correction and path extension. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2858267
Min Li*, Xiangmao Meng, Ruiqing Zheng, Fang-Xiang Wu, Yaohang Li, Yi Pan, Jianxin Wang. Identification of protein complexes by using a spatial and temporal active protein interaction network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2749571
Min Li*, Ruiqing Zheng, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang*. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2705143
Min Li*, Peng Ni, Xiaopei Chen, Jianxin Wang, and Yi Pan. Construction of refined protein interaction network for predicting essential proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2665482
Min Li*, Jie Yang, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinformatics. 2018, 34(9):1597-1599.
• Ruiqing Zheng, Min Li*, Xiang Chen, Siyu Zhao, Fangxiang Wu, Yi Pan, Jianxin Wang. An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2019.2900614
• Huimin Luo, Min Li, Shaokai Wang, Quan Liu, Yaohang Li, Jianxin Wang. Computational Drug Repositioning using Low-Rank Matrix Approximation and Randomized Algorithms. Bioinformatics, 2018, 34(11):1904-1912.
Min Li, Zhongxiang Liao, Yiming He, Jianxin Wang, Junwei Luo, and Yi Pan. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017,14(4):916-925.
Min Li, Yu Lu, Zhibei Niu, Fangxiang Wu. United complex centrality for identification of essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2): 370-380.
• Wei Peng, Min Li*, Lu Chen, and Lusheng Wang. Predicting protein functions by using unbalanced random walk algorithm on three biological networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2):360-369.
• Wei Lan, Min Li, Kaijie Zhao, Jin Liu, Fangxiang Wu, Yi Pan, Jianxin Wang*. LDAP: a web server for lncRNA-disease association prediction. Bioinformatics, 2017, 33(3): 458-460.
• Lin Wu, Min Li, Jianxin Wang, and Fang-Xiang Wu. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis. Bioinformatics, 2017, 34(8): 1428-1430.
• Huimin Luo, Jianxin Wang, Min Li, Junwei Luo, Xiaoqing Peng, Fangxiang Wu, Yi Pan. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics, 2016, 32(17): 2664-2671.
Min Li, Yu Lu, Jianxin Wang, Fang-Xiang Wu, Yi Pan. A topology potential-based method for identifying essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12(2): 372-383. >>full list of papers

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