Publication list
•Ruiqing Zheng, Min Li*, Zhenlan Liang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. SinNLRR: a robust subspace clustering method for cell type detection by nonnegative and low rank representation. Bioinformatics. DOI: 10.1093/bioinformatics/btz139
•Xingyi Li, Wenkai Li, Min Zeng, Ruiqing Zheng, and Min Li*. Network-based Methods for Predicting Essential Genes or Proteins: A Survey. Briefings in Bioinformatics. 2019, doi:10.1093/bib/bbz017
Min Li, Li Tang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. SCOP: a novel scaffolding algorithm based on contig classification and optimization. Bioinformatics. DOI: 10.1093/bioinformatics/bty773.
•Ruiqing Zheng, Min Li*, Xiang Chen, Fang-Xiang Wu, Yi Pan and Jianxin Wang. BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks. Bioinformatics. DOI: 10.1093/bioinformatics/bty908.
Min Li, Hao Gao, Jianxin Wang and Fang-Xiang Wu. Control Principles for Complex Biological Networks, Briefings in Bioinformatics, 2018, doi:10.1093/bib/bby088
Min Li, Zhihui Fei, Min Zeng, Fang-Xiang Wu, Yaohang Li, Yi Pan, and Jianxin Wang. Automated ICD-9 Coding via A Deep Learning Approach. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2817488
Min Li, Li Tang, Zhongxiang Liao, Junwei Luo, FangXiang Wu, Yi Pan, and Jianxin Wang. A noval scaffolding method based on contig error correction and path extension. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2858267
Min Li*, Xiangmao Meng, Ruiqing Zheng, Fang-Xiang Wu, Yaohang Li, Yi Pan, Jianxin Wang. Identification of protein complexes by using a spatial and temporal active protein interaction network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2749571
Min Li*, Ruiqing Zheng, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang*. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2705143
Min Li*, Peng Ni, Xiaopei Chen, Jianxin Wang, and Yi Pan. Construction of refined protein interaction network for predicting essential proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2665482
•Xiang Chen, Min Li*, FangXiang Wu, Yaohang Li, and Jianxin Wang. A novel method of gene regulatory network structure inference from gene knock-out expression data. TSINGHUA SCIENCE AND TECHNOLOGY. DOI:10.26599/TST.2018.9010097.
•Xingyu Liao, Min Li, Junwei Luo, You Zou, Fang-Xiang Wu, Yi Pan, Feng Luo, and Jianxin Wang*. Improving de novo assembly based on reads classification. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2861380
•Huimin Luo, Jianxin Wang, Min Li, Junwei Luo, Peng Ni, Kaijie Zhao, Fang-Xiang Wu and Yi Pan. Computational drug repositioning with random walk on a heterogeneous network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2832078
•Junwei Luo, Jianxin Wang, Juan Shang, Huimin Luo, Min Li, Fangxiang Wu and Yi Pan GapReduce: a gap filling algorithm based on partitioned read sets. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2789909
•Gaoshi Li, Min Li, Jianxin Wang*, Yaohang Li, Fang-Xiang Wu and Yi Pan. United neighborhood closeness centrality and orthology for predicting essential proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2018.2889978
•Binbin Wu, Min Li, Xingyu Liao, Junwei Luo, Fangxiang Wu, Yi Pan, Jianxin Wang. MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
•Jiang, Hui; Wang, Jianxin; Li, Min; Lan, Wei; Wu, Fangxiang; Pan, Yi. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
•Min Zeng, Min Li*, Zhihui Fei, Fangxiang Wu, Yaohang Li, Yi Pan and Jianxin Wang. A deep learning framework for identifying essential proteins by integrating multiple sources of biological information. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI :10.1109/TCBB.2019.2897679
•Ruiqing Zheng, Min Li*, Xiang Chen, Siyu Zhao, Fangxiang Wu, Yi Pan, Jianxin Wang. An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2019.2900614
•Zhen Zhang, Junwei Luo, Juan Shang, Min Li, Fang-Xiang Wu, Yi-Pan, Feng Luo and Jianxin Wang*. Deletion detection method using the distribution of insert size and a precise alignment strategy. IEEE/ACM Transactions on Computational Biology and Bioinformatics.
•Xingyu Liao, Min Li, You Zou, Fang-Xiang Wu, Yi Pan and Jianxin Wang. An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2019.2897558
•Min Zeng, Min Li*, Zhihui Fei, Ying Yu, Yi Pan, and Jianxin Wang. Automatic ICD-9 coding via deep transfer learning. Neurocomputing, 2019(324):43-50. DOI: 10.1016/j.neucom.2018.04.081
•Fangxiang Wu and Min Li. Deep learning for biological/clinical data, Neurocomputing, 2019(324):1-2. https://doi.org/10.1016/j.neucom.2018.05.047.
•Welhefna, Min Li, Jianxin Wang and Yaohang Li. Decoding the Structural Keywords in Protein Structure Universe. Journal of Computer Science and Technology. 2019, 34(1):3-15. Jan. 2019
•Lin Wu, Min Li, Jianxin Wang, and Fang-Xiang Wu. Controllability of complex networks and its applications to biological networks. Journal of Computer Science and Technology. 2019, 34(1):16-34. Jan. 2019
Min Li*, Jie Yang, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinformatics. 2018, 34(9):1597-1599. DOI: 10.1093/bioinformatics/btx821. Published 28 Apr 2018
•Huimin Luo, Min Li, Shaokai Wang, Quan Liu, Yaohang Li, Jianxin Wang. Computational Drug Repositioning using Low-Rank Matrix Approximation and Randomized Algorithms. Bioinformatics, 2018, 34(11):1904-1912. DOI: 10.1093/bioinformatics/bty013
•Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li, and Jianxin Wang. Prediction of lncRNA-disease associations based on inductive matrix completion. Bioinformatics, 2018, 34(19): 3357-3364. 1 October 2018 doi/10.1093/bioinformatics/bty327.
Min Li, Wenkai Li, Fang-Xiang Wu, Yi Pan, Jianxin Wang. Identifying essential proteins based on sub-network partition and prioritization by integrating subcellular localization information. Journal of Theoretical Biology. 2018, 447:65-73. DOI: 10.1016/j.jtbi.2018.03.029. Available online 21 March 2018
•Jin Liu, Min Li, Wei Lan, Fangxiang Wu, Yi Pan, Jianxin Wang*. Classification of Alzheimer’s Disease Using Whole Brain Hierarchical Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2018, 15(2): 624-632. MARCH/APRIL 2018. http://dx.doi.org/10.1109/TCBB.2016.2635144
•Wei Lan, Jianxin Wang, Min Li, Jin Liu, Fangxiang Wu, Yi Pan. Predicting microRNA-disease associations based on improved microRNA and disease similarities". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2018,15(6):1774-1782. DOI:10.1109/TCBB.2016.2586190. Issue Date: NOVEMBER/DECEMBER 2018
•Liangliang Liu, Ying Yu, Zhihui Fei, Min Li, FangXiang Wu, HongDong Li, Yi Pan, Jianxin Wang. An interpretable boosting model to predict side effects of analgesics for osteoarthritis. BMC systems biology 12 (6), 105.
•Jin Liu, Yi Pan, Min Li, Ziyue Chen, Lu Tang, Chengqian Lu, and Jianxin Wang*. Applications of Deep Learning to MRI Images: A Survey. BIG DATA MING AND ANALYSIS, 2018, 1(1):1-18. March 2018.
•Fang-Xiang Wu, Jianxin Wang, Min Li, Haiying Wang. Biomolecular Networks for Complex Diseases. Complexity, Volume 2018, Article ID 4210160, 3 pages doi.org/10.1155/2018/4210160
•Andy Ramlatchan, Mengyun Yang, Quan Liu, Min Li, Jianxin Wang, and Yaohang Li. A Survey of Matrix Completion Methods for Recommendation Systems. BIG DATA MING AND ANALYSIS, 2018, 1(4): 308-323. DOI: 10.26599/BDMA.2018.9020008
Min Li*, Dongyan Li, Yu Tang, FangXiang Wu, and Jianxin Wang. CytoCluster: a cytoscape plugin for cluster analysis and visualization of biological networks. Int. J. Mol. Sci. 2017, 18, 1880; doi:10.3390/ijms18091880 (International Journal of Molecular Sciences)
Min Li*, Zhongxiang Liao, Yiming He, Jianxin Wang, Junwei Luo, and Yi Pan. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017,14(4):916-925. DOI 10.1109/TCBB.2016.2550433. JUL-AUG 2017
Min Li, Ping Huang, Xiaodong Yan, Lingchen Zhao, Jianxin Wang, Fang-Xiang Wu, and Yi Pan. VAliBS: a visual aligner for bisulfite sequences. BMC Bioinformatics 2017 18(Suppl 12):410. Published on: 16 October 2017
Min Li, Binbin Wu, XiaodongYan, Fang-Xiang Wu, Yi Pan, Jianxin Wang*. PECC: correcting contigs based on paired-end read distribution. Computational Biology and Chemistry, 2017, 69:178-184. DOI 10.1016/j.compbiolchem.2017.03.012
Min Li, Yu Lu, Zhibei Niu, Fangxiang Wu. United complex centrality for identification of essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2): 370-380. DOI 10.1109/TCBB.2015.2394487
•Wei Peng, Min Li*, Lu Chen, and Lusheng Wang. Predicting protein functions by using unbalanced random walk algorithm on three biological networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2):360-369. DOI 10.1109/TCBB.2015.2394314
•Wei Lan, Min Li, Kaijie Zhao, Jin Liu, Fangxiang Wu, Yi Pan, Jianxin Wang*. LDAP: a web server for lncRNA-disease association prediction. Bioinformatics, 2017, 33(3): 458-460. DOI: 10.1093/bioinformatics/btw639.
•Lin Wu, Min Li, Jianxin Wang, and Fang-Xiang Wu. CytoCtrlAnalyser: a Cytoscape app for biomolecular network controllability analysis. Bioinformatics, 2017, 34(8): 1428-1430. doi.org/10.1093/bioinformatics/btx764
•Junwei Luo, Jianxin Wang, Zhen Zhang, Min Li, Fang-Xiang Wu and Yi Pan. BOSS: a novel scaffolding algorithm based on optimized scaffold graph. Bioinformatics, 2017, 33(2):169-176. DOI: 10.1093/bioinformatics/btw597
•Jianxin Wang, Yi Pan. Guest Editors Introduction to the Special Section on ISBRA 2014, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, 14(2): 314-315
•Jin Liu, Min Li, Yi Pan, Fangxiang Wu, Xiaogang Chen, Jianxin Wang*.Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. IEEE Transactions on NanoBioscience, 2017, 16(7): 600-608. OCTOBER 2017. DOI: 10.1109/TNB.2017.2751074
•Jin Liu, Min Li, Yi Pan, Wei Lan, Ruiqing Zheng, Fang-Xiang Wu and Jianxin Wang. Complex Brain Network Analysis and Its Applications to Brain Disorders: A Survey. Complexity. Volume 2017, Article ID 8362741, 27 pages https://doi.org/10.1155/2017/8362741
•Lin Wu, Lingkai Tang, Min Li, Jianxin Wang, and Fang-Xiang Wu. Biomolecular Network Controllability With Drug Binding Information. IEEE Transactions on Nanobioscience. 2017, 16(5): 326-332. DOI: 10.1109/TNB.2017.2705106.
•Jiancheng Zhong, Jianxin Wang, Xiaojun Ding, Zhen Zhang, Min Li, Fang-Xiang Wu, Yi Pan. Protein Inference from the Integration of Tandem MS Data and Interactome Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 2017, 14(6): 1399-1409. NOVEMBER/DECEMBER 2017. DOI 10.1109/TCBB.2016.2601618
Min Li, Yu Tang, Xuehong Wu, Jianxin Wang*, Fang-Xiang Wu, Yi Pan. C-DEVA: detection, evaluation, visualization and annotation of clusters from biological networks. Biosystems, 2016,150:78-86. DOI 10.1016/j.biosystems.2016.08.004
Min Li, Ruiqing Zheng, Qi Li, Jianxin Wang, Fangxiang Wu, Zhuohua Zhang. Prioritizing Disease Genes by Using Search Engine Algorithm. Current Bioinformatics, 2016, 11(2): 195-202. DOI: 10.2174/1574893611666160125220905
Min Li, Zhibei Niu, Xiaopei Chen, Ping Zhong*, Fang-Xiang Wu, Yi Pan. A reliable neighbor-based method for identifying essential proteins by integrating gene expressions, orthology, and subcellular localization information. TSINGHUA SCIENCE AND TECHNOLOGY, 2016, 12(6): 668-677.
•Gaoshi Li, Min Li*, Jianxin Wang*, Fang-Xiang Wu and Yi Pan. Predicting essential proteins based on subcellular localization, orthology and PPI networks. BMC Bioinformatics. Vol 17 Suppl, 2016. DOI: 10.1186/s12859-016-1115-5
•Ashraf Yaseen, Mais Nijim, Brandon Williams, Lei Qian, Min Li, Jianxin Wang and Yaohang Li. FLEXc: protein flexibility prediction using context-based statistics, predicted structural features, and sequence information. BMC Bioinformatics. Vol 17 Suppl, 2016. DOI: 10.1186/s12859-016-1117-3
•Sheng-You Huang, Min Li, Jianxin Wang, and Yi Pan. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. 2016, 56(6): 1078-1087. DOI: 10.1021/acs.jcim.5b00275.
•Huimin Luo, Jianxin Wang, Min Li, Junwei Luo, Xiaoqing Peng, Fangxiang Wu, Yi Pan. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics, 2016, 32(17): 2664-2671. DOI: 10.1093/bioinformatics/btw228
•Bihai Zhao, Jianxin Wang*, Min Li*, Xueyong Li, Yaohang Li, Fang-Xiang Wu, Yi Pan. A new method for predicting protein functions from dynamic weighted interactome networks, IEEE Transactions on Nanobioscience, 2016, 15(2): 133-141. DOI: 10.1109/TNB.2016.2536161
•Bolin Chen, Xuequn Shang, Min Li, Jianxin Wang, and Fang-Xiang Wu*. Identifying individual-cancer-related genes by re-balancing the training samples. IEEE Transactions on Nanobioscience, 2016, 15(4):309-315. DOI: 10.1109/TNB.2016.2553119
•Wei Lan, Jianxin Wang, Min Li, Jin Liu, Yaohang Li, Fangxiang Wu, Yi Pan. Predicting drug-target interaction using positive-unlabeled learning. Neurocomputing, 2016, 206:50-57 DOI: 10.1016/j.neucom.2016.03.080
•Lin Wu, Min Li, Jianxin Wang, and Fang-Xiang Wu. The minimum steering node set of complex networks and its applications to biomolecular networks. IET Systems Biology, 2016, 10(3):116-23. 2016 Jun
•Jianxin Wang, Min Li, Zuguo Yu. Nonlinear Science and Network Methods For Prediction Problems In Bioinformatics And Systems Biology. Current Bioinformatics. 2016, 11(2):154-155.
Min Li, Yu Lu, Jianxin Wang, Fang-Xiang Wu, Yi Pan. A topology potential-based method for identifying essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12(2): 372-383. DOI 10.1109/TCBB.2014.2361350, 2014
•Yu Tang, Min Li*, Jianxin Wang, Yi Pan, Fang-Xiang Wu. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72. DOI: 10.1016/j.biosystems.2014.11.005
•Xiaojun Ding, Min Li*, Haihua Gu, Zhen Zhang, and Fangxiang Wu. Detecting SNP combinations discriminating human populations from HapMap data. IEEE Transactions on Nanobioscience, 2015, 14(2):220-228. DOI (identifier) 10.1109/TNB.2015.2391134, 2015.
•Bolin Chen, Min Li, Jianxin Wang, Xuequn Shang and Fang-Xiang Wu. A fast and high performance multiple data integration algorithm for identifying human disease genes. BMC Medical Genomics, 2015, 8(Suppl 3): S2. 09/2015; DOI:10.1186/1755-8794-8-S3-S2
•Jun Ren, Jianxin Wang, Min Li, Fangxiang Wu. Discovering essential proteins based on PPI network and protein complex. Int. J. DataMing and Bioinformatics, 2015,12(1): 24-43.(SCI, Impact factor: 0.667) DOI: 10.1504/IJDMB.2015.068951
•Gamage Upeksha Ganegoda, Min Li, Weiping Wang, and Qilong Feng*. Heterogeneous Network Model to Infer Human Disease-Long Non Coding RNA Associations. IEEE Transactions on Nanobioscience, 2015, 14(2): 175-183.
•Lin Wu, Yichao Shen, Min Li, and Fang-Xiang Wu. Network Output Controllability-Based Method for Drug Target Identification. IEEE Transactions on Nanobioscience. 2015 Mar;14(2):184-191. doi: 10.1109/TNB.2015.2391175. Epub 2015 Jan 26.
•Junwei Luo, Jianxin Wang, Weilong Li, Zhen Zhang, Fangxiang Wu, Min Li, and Yi Pan. EPGA2: memory-efficient de novo assembler. Bioinformatics. 2015, 31(24): 3988-3990
•Wang, Jianxin; Zhong, Jiancheng; Chen, Gang; Li, Min; Pan, Yi.ClusterViz: a Cytoscape APP for Clustering Analysis of Biological Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015,12(4):815-22.
•Xiaoqing Peng, Jianxing Wang, Zhen Zhang, Qianghua Xiao, Min Li, and Yi Pan. Re-alignment of the unmapped reads with base quality score. BMC Bioinformatics, 2015, 16(Suppl 5):S8
•Weijie Chen, Min Li*, Xuehong Wu, and Jianxin Wang. Identifying protein complexes based on the integration of PPI network and gene expression data. Int. J. Bioinformatics Research and Applications, 2015, Vol. 11, No. 1, pp.30–44.
•Wei Lan, Jianxin Wang, Min Li, Wei Peng, Fang-Xiang Wu. Computational approaches for prioritizing candidate disease genes based on PPI networks. TSINGHUA SCIENCE AND TECHNOLOGY, 2015, 20(5):500-512.
•Jiancheng Zhong, Jianxin Wang, Wei Peng, Zhen Zhang, and Min Li. A Feature Selection Method for Prediction Essential Protein. TSINGHUA SCIENCE AND TECHNOLOGY, 2015, 20(5): 491-499.
Min Li, Ruiqing Zheng, Hanhui Zhang, Jianxin Wang, and Yi Pan. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. Methods,2014,67(3):325-333. doi: 10.1016/j.ymeth.2014.02.016
Min Li, Weijie Chen, Jianxin Wang, Fang-Xiang Wu, and Yi Pan. Identifying dynamic protein complexes based on gene expression profiles and PPI Networks. BioMed Research International. Volume 2014 (2014), Article ID 375262, 10 pages. (formerly titled Journal of Biomedicine and Biotechnology)
Min Li, Jiayi Zhang, Qing Liu, Jianxin Wang, Fang-Xiang Wu. Prediction of disease-related genes based on weighted tissue-specific network by using DNA methylation. BMC Medical Genomics, 2014, 7(Suppl 2):S4.
Min Li, Qi Li, Gamage Upeksha Ganegoda, Jianxin Wang, FangXiang Wu, and Yi Pan. Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks. SCIENCE CHINA Life Sciences. Sci China Life Sci, 2014, 57:1064–1071. doi: 10.1007/s11427-014-4747-6.
•Qiling Li, Min Li, Li Ma, Wenzhi Li, Xuehong Wu, Jendai Richards, Guoxing Fu, Wei Xu, Tameka Bythwood, Xu Li, Jianxin Wang, Qing Song. A Method to Evaluate Genome-wide Methylation in Archival Formalin-fixed, Paraffin-embedded Ovarian Epithelial Cells. Plos ONE, 2014, 9(8): e104481. 2014. DOI: 10.1371/journal.pone.0104481
•Bolin Chen, Min Li, Jianxin Wang, Fang-Xiang Wu. Disease gene identification by using graph kernels and Markov random fields. Sci China Life Sci, 2014, 57(11): 1054-1063.
•Junwei Luo, Jianxin Wang, Zhen Zhang, Fang-Xiang Wu, Min Li, and Yi Pan. EPGA: de novo assembly using the distributions of reads and insert size. Bioinformatics, 2014, 31(6):825-333. Mar 15; doi: 10.1093/bioinformatics/btu762. Epub 2014 Nov 17.
•Xiwei Tang, Jianxin Wang, Min Li, Yiming He, and Yi Pan. A Novel Algorithm for Detecting Protein Complexes with the Breadth First Search. BioMed Research International, Volume 2014 (2014), Article ID 354539, 8 pages. http://dx.doi.org/10.1155/2014/354539
•Bihai Zhao, Jianxin Wang, Min Li, Fang-xiang Wu and Yi Pan. Detecting Protein Complexes Based on Uncertain Graph Model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, 11(3): 486-497.
•Bihai Zhao, Jianxin Wang, Min Li,, Fang-xiang Wu, Yi Pan. Prediction of essential proteins based on overlapping essential modules. IEEE Transactions on Nanobioscience, 2014,13(4):1-10. DOI (identifier) 10.1109/TNB.2014.2337912.
•Bolin Chen, JianXin Wang, Min Li, and FangXiang Wu: Identifying disease genes by integrating multiple data sources, BMC Medical Genomics, 2014, 7(Suppl 2):S2.
•Gamage Upeksha Ganegoda, JianXin Wang , Fang-Xiang Wu, Min Li. Prediction of disease genes using tissue-specified gene-gene network. BMC Systems Biology, 2014, 8(Suppl 3):S3. doi:10.1186/1752-0509-8-S3-S3
•Wei Peng, Jianxin Wang, Juan Cai, Lu Chen, Min Li, Fangxiang Wu. Improving protein function prediction using domain and protein complexes in PPI networks. BMC Systems Biology, 2014,8:35
•Jin Liu, Min Li, Jianxin Wang*, Fangxiang Wu, Tianming Liu, and Yi Pan. A Survey of MRI-Based Brain Tumor Segmentation Methods. TSINGHUA SCIENCE AND TECHNOLOGY, 2014, 19(6):578-595.
Min Li, Xuehong Wu, Yi Pan, and Jianxin Wang*. hF-measure: a new measurement for evaluating clusters from protein interaction networks, PROTEOMICS, 2013, 13(2):291-300. doi:10.1002/pmic.201200436.
Min Li, Jianxin Wang, Huan Wang, and Yi Pan. Identification of Essential Proteins from Weighted Protein Interaction Networks. J Bioinform Comput Biol 11(3): 1341002, 2013. Journal of Bioinformatics and Computational Biology
•Jun Ren, Jianxin Wang, Min Li, Lusheng Wang. Identifying protein complexes based on density and modularity in Protein-Protein Interaction Network. BMC Systems Biology. 2013, 7(Suppl 4):S12 doi:10.1186/1752-0509-7-S4-S12.
•Qiling Li, Ting Kang, Xiaohua Tian, Yamin Ma, Min Li, Jendai Richards, Tameka Bythwood, Yueling Wang, Xu Li, Dong Liu,Li Ma, Qing Song. Multimeric Stability of Human C-reactive Protein in Archived Specimens. PLoS ONE, 2013, 8(3): e58094. doi:10.1371/journal.pone.0058094
•Jianxin Wang, Xiaoqing Peng, Min Li, Yi Pan. Construction and application of dynamic protein interaction network based on time course gene expression data. PROTEOMICS, 2013, 13(2):301-312. doi: 10.1002/pmic.201200277.
•Jianxin Wang, Xiaoqing Peng, Qianghua Xiao, Min Li and Yi Pan. An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation. BMC Systems Biology, 2013, 7:28
•Murtada Khalafallah Elbashir, Yu Sheng, Jianxin Wang, Fangxiang Wu, Min Li. Predicting Beta-turns in Protein Using Kernel Logistic Regression. BioMed Research International. Volume 2013 (2013), Article ID 870372, 9 pages.
Min Li, Hanhui Zhang, Jianxin Wang, and Yi Pan. A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data, BMC Systems Biology, 2012, 6:15. (NO.61003124; NO.20090162120073; NO.201012200124)
Min Li, Xuehong Wu, Jianxin Wang, and Yi Pan. Towards the identification of protein Complexes and Functional Modules by integrating PPI network and gene expression data. BMC Bioinformatics, 2012, 13:109
•Jianxin Wang, Min Li, Huan Wang, Yi Pan. Identification of Essential Proteins Based on Edge Clustering Coefficient. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012, 9(4):1070-1080.
•Jianxin Wang, Gang Chen, Binbin Liu, Min Li, Yi Pan, Identifying Protein Complexes from Interactome Based on Essential Proteins and Local Fitness Method, IEEE Transactions on Nanobioscience, 2012, 11(4):324-335.
•Jianxin Wang, Jun Ren, Min Li, Fangxiang Wu. Identification of hierarchical and overlapping functional modules in PPI networks. IEEE Transactions on NanoBioscience 2012, 11(4):386-393.
Min Li, Jianxin Wang, Xiang Chen, Huan Wang and Yi Pan. A local average connectivity-based method for identifying essential proteins from the network level. Computational Biology and Chemistry 35 (2011), pp. 143-150
•Jianxin Wang, Min Li*, Jian’er Chen and Yi Pan. A fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8(3):607-620, May/June 2011
•Xiwei Tang, Jianxin Wang, Binbin Liu, Min Li*, Gang Chen, Yi Pan: A comparison of the functional modules identified from time course and static PPI network data. BMC Bioinformatics, 2011, 12:339
•Wooyoung Kim, Min Li*, Jianxin Wang, Yi Pan. Biological Network Motif Detection and Evaluation. BMC Systems Biology 2011, 5(Suppl 3):S5
•Jianxin Wang, Gang Chen, Min Li, Yi Pan. Integration of Breast Cancer Gene Signatures based on Graph Centrality. BMC Systems Biology 2011, 5(Suppl 3):S10
Min Li, Jianxin Wang, Jianer Chen, Zhao Cai, and Gang Chen. Identifying the Overlapping Complexes in Protein Interaction Networks. Int. J. DataMing and Bioinformatics(IJDMB), 2010, 4(1):91-108.
•Jianxin Wang, Min Li*, Youping Deng, Yi Pan. Recent Advances in Clustering Methods for Protein Interaction Networks. BMC Genomics 2010, 11(Suppl 3):S10. doi:10.1186/1471-2164-11-S3-S10
•Jianxin Wang, Binbin Liu, Min Li* and Yi Pan. Identifying protein complexes from interaction networks based on clique percolation and distance restriction. BMC Genomics, Volume 11, Suppl 2, S10, Nov. 2010
Min Li, Jianxin Wang, Jian’er Chen and Yi Pan. Hierarchical organization of functional modules in weighted protein interaction networks using clustering coefficient. ISBRA2009, Lecture Notes in Bioinformatics 5542, 75-86.
Min Li, Jian’er Chen, Jianxin Wang, Bin Hu, and Gang Chen. Modifying the DPClus algorithm for identifying protein complexes based on new topological structures. BMC Bioinformatics, 2008, 9:398. >>back

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