finds clusters (highly interconnected regions, protein complexes or functional module) in a network using various clustering algorithms.
is a Cytoscape app for analysis and visualization of clusters from network, and has been tested on Cytoscape 3.0.X. Three different graph clustering algorithms (HC-PIN, OH-PIN, IPCA) were implemented
is a scalable platform, in which a series of evaluation methods, such as recall, precision, sensitivity, specificity, p-value, and function enrichment, are implemented. Moreover, nine clustering algo
Modifying the DPClus algorithm for identifying protein complexes based on new topological structures.
HC-PIN is a fast hierarchical clustering algorithm based on the local metric of edge clustering value which can be used both in the unweighted network and in the weighted network.
Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data,Include two jar files: TSN-PCD.jar and DFM-CIN.jar. TSN-PCD.jar .