DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning

Software download: DeepSignal

DeepSignal constructs a BiLSTM+Inception structure to detect DNA methylation state from Nanopore reads. It is built with Tensorflow 1.8 and Python 3.

Author: Peng Ni, Neng Huang, Zhi Zhang

Source download

Trained model download：model.CpG.R9.4_1D.human_hx1.bn17.sn360.tar.gz (The model is for CpG detection trained using HX1 R9.4 1D reads.)

Example data download：fast5s.sample.tar.gz (The example data is ~4000 yeast R9.4 1D reads each with called events (basecalled by Albacore), along with a genome reference.)