Publication list
Books and Chapters
• Yi Pan, Jianxin Wang, and Min Li, Algorithmic and AI Methods for Protein Bioinformatics, John Wiley & Sons, Inc., Hardbound, 2013. ISBN: 978-1-1183-4578-8
• Jianxin Wang, and Qilong Feng, Introduction to the Parameterized Computation, Science Press, 2014.
• Jianxin Wang, Congestion Control in Computer Networks: Theory, Protocols and Applications, Nova Science Publishers, USA, 2010.12
• Jianxin Wang, Chee-Keng Yap: Frontiers in Algorithmics - 9th International Workshop, FAW 2015, Guilin, China, July 3-5, 2015, Proceedings. Lecture Notes in Computer Science 9130, Springer 2015, ISBN 978-3-319-19646-6
• Jianer Chen, John E. Hopcroft, Jianxin Wang: Frontiers in Algorithmics - 8th International Workshop, FAW 2014, Zhangjiajie, China, June 28-30, 2014. Proceedings. Lecture Notes in Computer Science 8497, Springer 2014, ISBN 978-3-319-08015-4
• Mitra Basu, Yi Pan, Jianxin Wang: Bioinformatics Research and Applications - 10th International Symposium, ISBRA 2014, Zhangjiajie, China, June 28-30, 2014. Proceedings.Lecture Notes in Computer Science 8492, Springer 2014, ISBN 978-3-319-08170-0
• Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang (Eds.): Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings. Lecture Notes in Computer Science 7292 Springer 2012, ISBN 978-3-642-30190-2
• Jianer Chen, Jianxin Wang, Alexander Zelikovsky (Eds.): Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings. Lecture Notes in Computer Science 6674 Springer 2011, ISBN 978-3-642-21259-8
• "Analysis of Connectivity for Sensor Networks Using Geometrical Probablity", in Handbook on Mobile and Ubiquitous Computing: Innovations and Perspectives edited by Evi Syukur, Laurence T. Yang and Seng Wai Loke, American Scientific Publishers, December 2006, invited
• 《Computer Networks》, Beijing University of Posts and Telecommunications Press，2004.
Refereed Journal Papers
• Junyang Bai, Weiping Wang, Yan Qin, Shigeng Zhang, Jianxin Wang and Yi Pan. BridgeTaint - A Bi-Directional Dynamic Taint Tracking Method for JavaScript Bridges in Android Hybrid Applications, IEEE Trans. Information Forensics and Security, 2019(14): 677-692
• Ying Yu, Min Li, Liangliang Liu, Zhihui Fei, Fang-Xiang Wu, Jianxin Wang*, Automatic ICD code Assignment of Chinese Clinical Notes based on Multilayer Attention BiRNN, Journal of Biomedical Informatics, 2019, in press
• Cheng Yan, Jianxin Wang*, Peng Ni, Wei Lan, Fangxiang Wu and Yi Pan. DNRLMF-MDA: predicting microRNA-disease associations based on similarities of micrornas and diseases. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, DOI:10.1109/TCBB.2017.2776101,
• Yazhou Kong, Jianliang Gao, Yunpei Xu, Yi Pan, Jianxin Wang and Jin Liu. Classification of autism spectrum disorder by combining brain connectivity and deep neural network classifier, Neurocomputing, 2019(324): 63-68
• Min Zeng, Min Li, Zhihui Fei, Ying Yu, Yi Pan and Jianxin Wang. Automatic ICD-9 coding via deep transfer learning, Neurocomputing, 2019(324): 43-50
• Ruiqing Zheng, Min Li, Xiang Chen, Fang-Xiang Wu, Yi Pan and Jianxin Wang. BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks. Bioinformatics. DOI: 10.1093/bioinformatics/bty908.
• Junwei Luo, Jianxin Wang*, Juan Shang , Huimin Luo , Min Li , Fangxiang Wu , Yi Pan, GapReduce: a gap filling algorithm based on partitioned read sets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2789909
• Hui Jiang, Jianxin Wang*, Min Li, Wei Lan, Fangxiang Wu, and Yi Pan. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets, IEEE/ACM transactions on computational biology and bioinformatics, 2018, doi: 10.1109/TCBB.2018.2873299
• Min Li, Li Tang, Zhongxiang Liao , Junwei Luo, Fangxiang Wu, Yi Pan, Jianxin Wang*, A novel scaffolding algorithm based on contig error correction and path extension, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2858267
• Gaoshi Li, Min Li, Jianxin Wang*, Yaohang Li , Yi Pan, United neighborhood closeness centrality and orthology for predicting essential proteins, IEEE/ACM Transactions on Computational Biology and Bioinformatics, doi 10.1109/TCBB.2018.2889978
• Xingyu Liao , Min Li , You Zou , Fangxiang Wu , Yi Pan , Feng Luo , Jianxin Wang*, Improving de novo assembly based on read classification, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2861380
• Tao Li, Xiankai Zhang, Feng Luo , Fangxiang Wu, Jianxin Wang*, MultiMotifMaker: a multi-thread tool for identifying DNA methylation motifs from Pacbio reads, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10.1109/TCBB.2018.2861399
• Binbin Wu, Min Li, Xingyu Liao , Junwei Luo , Fangxiang Wu , Yi Pan , Jianxin Wang*, MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2876855
• Min Li, Zhihui Fei, Min Zeng, Fangxiang Wu, Yaohang Li, Yi Pan, Jianxin Wang*, Automated ICD-9 Coding via A Deep Learning Approach, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2817488
• Peng Ni, Jianxin Wang*, Ping Zhong, Yaohang Li, Fangxiang Wu, Yi Pan, Constructing Disease Similarity Networks Based on Disease Module Theory, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2817624
• Fang-Xiang Wu, Jianxin Wang, Min Li and Haiying Wang. Biomolecular Networks for Complex Diseases, Complexity, 2018(2018): 4210160:1-4210160:3
• Wei Jiang, Wanchun Jiang, Weiping Wang, Haodong Wang, Yi Pan and Jianxin Wang*. A fine-grained rule partition algorithm in cloud data centers, J. Network and Computer Applications, 2018(113): 14-25
• Jin Liu, Xiang Wang, Xiangrong Zhang, Yi Pan, Xiaosheng Wang and Jianxin Wang*. MMM - classification of schizophrenia using multi-modality multi-atlas feature representation and multi-kernel learning, Multimedia Tools Appl., 2018(77): 29651-29667
• Ping Zhang, Shaokai Wang, Kehua Guo and Jianxin Wang*. A secure data collection scheme based on compressive sensing in wireless sensor networks, Ad Hoc Networks, 2018(70): 73-84
• Hong Wang, Jianxin Wang* and Lifeng Zhou. A survival ensemble of extreme learning machine, Appl. Intell., 2018(48): 1846-1858
• Huimin Luo, Min Li, Shaokai Wang, Quan Liu, Yaohang Li and Jianxin Wang*. Computational drug repositioning using low-rank matrix approximation and randomized algorithms, Bioinformatics, 2018(34): 1904-1912
• Haibo Wang, Hongli Xu, Liusheng Huang, Jianxin Wang and Xuwei Yang. Load-balancing routing in software defined networks with multiple controllers, Computer Networks, 2018(141): 82-91
• Huixi Li, Wenjun Li, Qilong Feng, Shigeng Zhang, Haodong Wang and Jianxin Wang*. Leveraging content similarity among VMI files to allocate virtual machines in cloud, Future Generation Comp. Syst., 2018(79): 528-542
• Huixi Li, Wenjun Li, Haodong Wang and Jianxin Wang*. An optimization of virtual machine selection and placement by using memory content similarity for server consolidation in cloud, Future Generation Comp. Syst., 2018(84): 98-107
• Pingping Dong, Wenjun Yang, Wensheng Tang, Jiawei Huang, Haodong Wang, Yi Pan and Jianxin Wang*. Reducing transport latency for short flows with multipath TCP, J. Network and Computer Applications, 2018(108): 20-36
• Zhi-Zhong Chen, Qilong Feng, Chao Shen, Jianxin Wang* and Lusheng Wang. Algorithms for Pedigree Comparison, IEEE/ACM Trans. Comput. Biology Bioinform., 2018(15): 422-431
• Jianliang Gao, Jianxin Wang*, Ping Zhong and Haodong Wang. On Threshold-Free Error Detection for Industrial Wireless Sensor Networks, IEEE Trans. Industrial Informatics, 2018(14): 2199-2209
• Sujun Li, Weiping Wang, Boqing Zhou, Jianxin Wang*, Yun Cheng and Jie Wu. A (M, m) Authentication Scheme Against Mobile Sink Replicated Attack in Unattended Sensor Networks, IEEE Wireless Commun. Letters, 2018(7): 250-253
• Ping Zhang, Jianxin Wang, Kehua Guo, Fan Wu and Geyong Min. Multi-functional secure data aggregation schemes for WSNs, Ad Hoc Networks, 2018(69): 86-99
• Lianhai Liu, Jianxin Wang, Jiawei Huang and Qilong Feng. Encounter Prediction-based Data Forwarding for High Reliability in Bus Networks, Ad Hoc Sensor Wireless Networks, 2018(41): 137-164
• Min Li, Jie Yang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. DyNetViewer - a Cytoscape app for dynamic network construction, analysis and visualization, Bioinformatics, 2018(34): 1597-1599
• Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li and Jianxin Wang*. Prediction of lncRNA-disease associations based on inductive matrix completion, Bioinformatics, 2018(34): 3357-3364
• Lin Wu, Min Li, Jianxin Wang and Fang-Xiang Wu. CytoCtrlAnalyser - a Cytoscape app for biomolecular network controllability analysis, Bioinformatics, 2018(34): 1428-1430
• Jianliang Gao, Bo Song, Xiaohua Hu, Fengxia Yan and Jianxin Wang. ConnectedAlign - a PPI network alignment method for identifying conserved protein complexes across multiple species, BMC Bioinformatics, 2018(19): 129-135
• Hui Liu, Jiazhi Xia, Jianer Chen and Jianxin Wang*. Detection of hierarchical intrinsic symmetry structure in 3D models, Computers & Graphics, 2018(70): 8-16
• Ping Zhang, Jianxin Wang* and Kehua Guo. Compressive sensing and random walk based data collection in wireless sensor networks, Computer Communications, 2018(129): 43-53
• Wanchun Jiang, Fengyuan Ren and Jianxin Wang*. Survey on link layer congestion management of lossless switching fabric, Computer Standards & Interfaces, 2018(57): 31-35
• Haosu Zhou, Jianxin Wang*, Peixin Zhang and Tian Ban. A constant false alarm rate frame detector for satellite-based automatic identification system, Int. J. Satellite Communications Networking, 2018(36): 1-13
• Yuping Ke, Yixin Cao, Xiating Ouyang, Wenjun Li and Jianxin Wang. Unit interval vertex deletion - Fewer vertices are relevant, J. Comput. Syst. Sci., 2018(95): 109-121
• Feng Shi, Jianer Chen, Qilong Feng and Jianxin Wang*. A parameterized algorithm for the Maximum Agreement Forest problem on multiple rooted multifurcating trees, J. Comput. Syst. Sci., 2018(97): 28-44
• Jin Liu, Min Li, Wei Lan, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network, IEEE/ACM Trans. Comput. Biology Bioinform., 2018(15): 624-632
• Jin Liu, Jianxin Wang*, Zhenjun Tang, Bin Hu, Fang-Xiang Wu and Yi Pan. Improving Alzheimer's Disease Classification by Combining Multiple Measures, IEEE/ACM Trans. Comput. Biology Bioinform, 2018(15): 1649-1659
• Qilong Feng, Neng Huang, Xiong Jiang and Jianxin Wang*. Dealing with several parameterized problems by random methods, Theor. Comput. Sci., 2018(734): 94-104
• Qilong Feng, Shaohua Li, Zeyang Zhou and Jianxin Wang*. Parameterized algorithms for Edge Biclique and related problems, Theor. Comput. Sci., 2018(734): 105-118
• Yalong Xiao, Shigeng Zhang, Jianxin Wang and Chengzhang Zhu. A Novel Indoor Localization Algorithm for Efficient Mobility Management in Wireless Networks, Wireless Communications and Mobile Computing, 2018(2018): 9517942:1-9517942:12
• Yongjie Yang and Jianxin Wang*. Parameterized Complexity of Multi-winner Determination - More Effort Towards Fixed-Parameter Tractability, AAMAS, 2018: 2142-2144
• Tao Zhang, Jiawei Huang, Jianxin Wang*, Jianer Chen, Yi Pan and Geyong Min. Designing Fast and Friendly TCP to Fit High Speed Data Center Networks, ICDCS, 2018: 43-53
• Yongjie Yang and Jianxin Wang*. Multiwinner Voting with Restricted Admissible Sets - Complexity and Strategyproofness, IJCAI, 2018: 576-582
• Jinbin Hu, Jiawei Huang, Wenjun Lv, Yutao Zhou, Jianxin Wang* and Tian He. CAPS - Coding-based Adaptive Packet Spraying to Reduce Flow Completion Time in Data Center, INFOCOM, 2018: 2294-2302
• Canshang Deng, Qingfeng Chen, Zhixian Liu, Ruiqing Zheng, Jin Liu, Jianxin Wang and Wei Lan. KSIBW - Predicting Kinase-Substrate Interactions Based on Bi-random Walk, ISBRA, 2018: 151-162
• Zhen Zhang, Jianxin Wang*, Junwei Luo, Juan Shang, Min Li, Fang-Xiang Wu and Yi Pan. Sprites2 - Detection of Deletions Based on an Accurate Alignment Strategy, ISBRA, 2018: 139-150
• Guangwei Wu, Jianer Chen and Jianxin Wang*. On Scheduling Two-Stage Jobs on Multiple Two-Stage Flowshops, CoRR, 2018(abs/1801.09089)
• Min Li, Peng Ni , Xiaopei Chen , Jianxin Wang* , Fangxiang Wu , Yi Pan, Construction of refined protein interaction network for predicting essential proteins, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2017.2665482
• Min Li, Ruiqing Zheng, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang*. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2705143
• Jin Liu, Jianxin Wang*, Bin Hu, Fang-Xiang Wu, and Yi Pan. Alzheimer’s Disease Classification Based on Individual Hierarchical Networks Constructed with 3D Texture Features. IEEE Transactions on NanoBioscience, 16(6): 428-437. 2017
• Min Li , Xiangmao Meng , Ruiqing Zheng , Fang-Xiang Wu , Yaohang Li , Yi Pan , Jianxin Wang, Identification of protein complexes by using a spatial and temporal active protein interaction network, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2017.2749571
• Jin Liu, Min Li, Yi Pan, Fang-Xiang Wu, and Jianxin Wang*. Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. IEEE Transactions on NanoBioscience, 16(7): 600-608. 2017
• Hai Yu, Siming Wan, Xiaobo Zhou, Jin Wang, Yongpeng Wu, Feng Shu, Jiangzhou Wang and Jianxin Wang. GPI-based Secrecy Rate Maximization Beamforming Scheme for Wireless Transmission with AN-aided Directional Modulation, CoRR, 2017(abs/1711.06463)
• Hai Yu, Feng Shu, You You, Jin Wang, Tingting Liu, Xiaohu You, Jinhui Lu, Jianxin Wang and Xiaohua Zhu. Compressed sensing-based time-domain channel estimator for full-duplex OFDM systems with IQ-imbalances, SCIENCE CHINA Information Sciences, 2017(60): 82303
• Guan Wang, Yu Sun and Jianxin Wang*. Automatic Image-Based Plant Disease Severity Estimation Using Deep Learning, Comp. Int. and Neurosc., 2017(2017): 2917536:1-2917536:8
• Yalong Xiao, Shigeng Zhang, Jiannong Cao, Haodong Wang and Jianxin Wang*. Exploiting distribution of channel state information for accurate wireless indoor localization, Computer Communications, 2017(114): 73-83
• Sujun Li, Weiping Wang, Boqing Zhou, Jianxin Wang, Yun Cheng and Jie Wu. A Secure Scheme for Heterogeneous Sensor Networks, IEEE Wireless Commun. Letters, 2017(6): 182-185
• Yalong Xiao, Jianxin Wang, Shigeng Zhang, Haodong Wang and Jiannong Cao. Accurate Indoor Localization with Multiple Feature Fusion, WASA, 2017: 522-533
• Xiaoqing Peng, Jianxin Wang*, Wei Peng, Fang-Xiang Wu and Yi Pan. Protein-protein interactions - detection, reliability assessment and applications, Briefings in Bioinformatics, 2017(18): 798-819
• Wei Lan, Min Li, Kaijie Zhao, Jin Liu, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. LDAP - a web server for lncRNA-disease association prediction, Bioinformatics, 2017(33): 458-460
• Junwei Luo, Jianxin Wang*, Zhen Zhang, Min Li and Fang-Xiang Wu. BOSS - a novel scaffolding algorithm based on an optimized scaffold graph, Bioinformatics, 2017(33): 169-176
• Min Li, Ping Huang, Xiaodong Yan, Jianxin Wang*, Yi Pan and Fang-Xiang Wu. VAliBS - a visual aligner for bisulfite sequences, BMC Bioinformatics, 2017(18): 91-98
• Min Li, Binbin Wu, Xiaodong Yan, Junwei Luo, Yi Pan, Fang-Xiang Wu and Jianxin Wang*. PECC - Correcting contigs based on paired-end read distribution, Computational Biology and Chemistry, 2017(69): 178-184
• Jin Liu, Min Li, Yi Pan, Wei Lan, Ruiqing Zheng, Fang-Xiang Wu and Jianxin Wang*. Complex Brain Network Analysis and Its Applications to Brain Disorders - A Survey, Complexity, 2017(2017): 8362741:1-8362741:27
• Cheng Yan, Jianxin Wang*, Wei Lan, Fang-Xiang Wu and Yi Pan. SDTRLS - Predicting Drug-Target Interactions for Complex Diseases Based on Chemical Substructures, Complexity, 2017(2017): 2713280:1-2713280:10
• Yaoxue Zhang, Kehua Guo, Ju Ren, Yuezhi Zhou, Jianxin Wang* and Jianer Chen. Transparent Computing - A Promising Network Computing Paradigm, Computing in Science and Engineering, 2017(19): 7-20
• Wenjun Li, Yixin Cao, Jianer Chen and Jianxin Wang*. Deeper local search for parameterized and approximation algorithms for maximum internal spanning tree, Inf. Comput., 2017(252): 187-200
• Xiaoshu Zhu, Jie Qiu, Miao Xie and Jianxin Wang*. A multi-objective biclustering algorithm based on fuzzy mathematics, Neurocomputing, 2017(253): 177-182
• Wen Xue, Tian Ban and Jianxin Wang. A modified normalized min-sum algorithm for LDPC decoding using order statistics, Int. J. Satellite Communications Networking, 2017(35): 163-175
• Chang Ruan, Jianxin Wang*, Wanchun Jiang, Jiawei Huang, Geyong Min and Yi Pan. FSQCN - Fast and simple quantized congestion notification in data center ethernet, J. Network and Computer Applications, 2017(83): 53-62
• Jiawei Huang, Qi Li, Shaohua Zhong, Lianhai Liu, Ping Zhong, Jianxin Wang* and Jin Ye. Synthesizing Existing CSMA and TDMA Based MAC Protocols for VANETs, Sensors, 2017(17): 338
• Mitra Basu, Yi Pan and Jianxin Wang. Guest Editors Introduction to the Special Section on ISBRA 2014, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 314-315
• Min Li, Zhongxiang Liao, Yiming He, Jianxin Wang*, Junwei Luo and Yi Pan. ISEA - Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 916-925
• Jiancheng Zhong, Jianxin Wang*, Xiaojun Ding, Zhen Zhang, Min Li, Fang-Xiang Wu and Yi Pan. Protein Inference from the Integration of Tandem MS Data and Interactome Networks, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 1399-1409
• Jianer Chen, Chao Xu and Jianxin Wang*. Dealing with 4-variables by resolution - An improved MaxSAT algorithm, Theor. Comput. Sci., 2017(670): 33-44
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Jianer Chen, Yi Pan and Geyong Min. Tuning the Aggressive TCP Behavior for Highly Concurrent HTTP Connections in Intra-Datacenter, IEEE/ACM Trans. Netw., 2017(25): 3808-3822
• Wanchun Jiang, HaiMing Xie, Xiangqian Zhou, Liyuan Fang and Jianxin Wang*. Performance Analysis and Improvement of Replica Selection Algorithms for Key-Value Stores, CLOUD, 2017: 786-789
• Yongjie Yang and Jianxin Wang*. Anyone But Them - The Complexity Challenge for A Resolute Election Controller, AAMAS, 2017: 1133-1141
• Binbin Wu, Jianxin Wang*, Junwei Luo, Min Li, Fang-Xiang Wu and Yi Pan. MEC - Misassembly error correction in contigs using a combination of paired-end reads and GC-contents, BIBM, 2017: 216-221
• Wanchun Jiang, Liyuan Fang, HaiMing Xie, Xiangqian Zhou and Jianxin Wang. Tars - Timeliness-Aware Adaptive Replica Selection for Key-Value Stores, ICCCN, 2017: 1-9
• Sen Liu, Jiawei Huang, Yutao Zhou, Jianxin Wang and Tian He. Task-aware TCP in Data Center Networks, ICDCS, 2017: 1356-1366
• Shaojun Zou, Jiawei Huang, Yutao Zhou, Jianxin Wang* and Tian He. Flow-Aware Adaptive Pacing to Mitigate TCP Incast in Data Center Networks, ICDCS, 2017: 2119-2124
• Shigeng Zhang, Xuan Liu, Jianxin Wang and Jiannong Cao. Tag size profiling in multiple reader RFID systems, INFOCOM, 2017: 1-9
• Wessam Elhefnawy, Min Li, Jianxin Wang and Yaohang Li. Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm, ISBRA, 2017: 108-119
• Peng Ni, Min Li, Ping Zhong, Guihua Duan, Jianxin Wang, Yaohang Li and Fang-Xiang Wu. Relating Diseases Based on Disease Module Theory, ISBRA, 2017: 24-33
• Shaohua Li, Qilong Feng, Xiangzhong Meng and Jianxin Wang*. An Improved FPT Algorithm for the Flip Distance Problem, MFCS, 2017: 65:1-65:13
• Wanchun Jiang, Liyuan Fang, HaiMing Xie, Xiangqian Zhou and Jianxin Wang. Tars - Timeliness-aware Adaptive Replica Selection for Key-Value Stores, CoRR, 2017(abs/1702.08172)
• Wenjun Li, Jianxin Wang and Yongjie Yang. Improved Kernels and Algorithms for Claw and Diamond Free Edge Deletion Based on Refined Observations, CoRR, 2017(abs/1707.06779)
• Peng, Wei, Jianxin Wang*, Zhen Zhang, and Fang-Xiang Wu. "Applications of Random Walk Model on Biological Networks." Current Bioinformatics 11, no. 2 (2016): 211-220.
• Min Li, Zhongxiang Liao, Yiming He, Jianxin Wang*, Junwei Luo, and Yi Pan. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI 10.1109/TCBB.2016.2550433, 2016
• Huimin Luo, Jianxin Wang*, Min Li, Junwei Luo, Xiaoqing Peng, Fangxiang Wu, Yi Pan. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics. DOI 10.1093/bioinformatics/btw228, 2016
• Bihai Zhao, Jianxin Wang*, Min Li, Xueyong Li, Yaohang Li, Fang-Xiang Wu, Yi Pan. A new method for predicting protein functions from dynamic weighted interactome networks, IEEE Transactions on Nanobioscience. DOI: 10.1109/TNB.2016.2536161, 2016
• Sheng-You Huang, Min Li, Jianxin Wang*, and Yi Pan. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. DOI: 10.1021/acs.jcim.5b00275. 2015
• Yu Tang, Min Li, Jianxin Wang, Yi Pan, Fang-Xiang Wu. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72.
• Junwei Luo, Jianxin Wang*, Weilong Li, Zhen Zhang, Fang-Xiang Wu, Min Li and Yi Pan. EPGA2: memory-efficien de novo assembler, Bioinformatics, 31(24), 3988-3990, 2015.
• Junwei Luo, Jianxin Wang* , Zhen Zhang, Fang-Xiang Wu, Min Li, and Yi Pan. EPGA: de novo assembly using the distributions of reads and insert size. Bioinformatics, 2015, 31(6):825-333.
• Wei Peng, Jianxin Wang* ,Bihai Zhao, Lusheng Wang. Identification of protein complexes using weighted PageRank-Nibble algorithm and core-attachment structure. Computational Biology and Bioinformatics, IEEE/ACM Transactions on, 2015, 12(1): 179-192.
• Min Li, Yu Lu, Jianxin Wang*, Fang-Xiang Wu, Yi Pan. A topology potential-based method for identifying essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12(2): 372-383.
• Yu Tang, Min Li, Jianxin Wang*, Yi Pan, Fang-Xiang Wu. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72.
• Sheng-You Huang, Min Li, Jianxin Wang*, and Yi Pan. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. DOI: 10.1021/acs.jcim.5b00275. 2015
• Jianxin Wang*, Jiancheng Zhong, Gang Chen, Min Li, Yi Pan,ClusterViz: a Cytoscape APP for Clustering Analysis of Biological Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015,12(4):815-22.
• Xiaoqing Peng, Jianxin Wang*, Zhen Zhang, Qianghua Xiao, Min Li, and Yi Pan. Re-alignment of the unmapped reads with base quality score. BMC Bioinformatics, 2015, 16(Suppl 5):S8
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Yi Huang, Jianer Chen, Yi Pan: Adaptive-Acceleration Data Center TCP. IEEE Trans. Computers 64(6): 1522-1533 (2015)
• Yunlong Liu, Jianxin Wang*, Jie You, Jianer Chen, Yixin Cao: Edge deletion problems: Branching facilitated by modular decomposition. Theor. Comput. Sci. 573: 63-70 (2015)
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Yi Huang, Jianer Chen, Yi Pan: Adaptive-Acceleration Data Center TCP. IEEE Trans. Computers 64(6): 1522-1533 (2015)
• Zhuofan Liao,Jianxin Wang*,Shigeng Zhang,Jiannong Cao,Geyong Min. Minimizing movement for target coverage and network connectivity in mobile sensor networks. IEEE Transactions on Parallel and Distributed Systems, 2015, 26(7): 1971-1983.
• Shigeng Zhang, Xuan Liu, Jianxin Wang*, Jiannong Cao, Geyong Min. Accurate range-free localization for anisotropic wireless sensor networks. ACM Transactions on Sensor Networks, 2015, 11(3): 51.
• Lin Chen, Jianxin Wang*, Xiaoqin Peng, Xiaoyan Kui. An energy-efficient and relay hop bounded mobile data gathering algorithm in wireless sensor networks. International Journal of Distributed Sensor Networks, 2015, 2015: 12.
• Pingping Dong, Jianxin Wang*,Haodong Wang,Yi Pan.Boosting VoIP capacity via service differentiation in IEEE 802.11 e EDCA networks. International Journal of Distributed Sensor Networks, 2015, 2015: 4.
• Boqing Zhou, Jianxin Wang*,Sujun Li,Weiping Wang .A new key predistribution scheme for multiphase sensor networks using a new deployment model. Journal of Sensors, 2014, 2014.
• Min Li, Ruiqing Zheng, Hanhui Zhang, Jianxin Wang*, and Yi Pan. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. Methods, 2014,67(3):325-333. doi: 10.1016/j.ymeth.2014.02.016 (SCI, Impact factor:4.159) Jun 1 ESI Top1%
• Min Li, Jiayi Zhang, Qing Liu, Jianxin Wang*, Fang-Xiang Wu. Prediction of disease-related genes based on weighted tissue-specific network by using DNA methylation. BMC Medical Genomics, 2014, 7(Suppl 2):S4.
• Min Li, Qi Li, Gamage Upeksha Ganegoda, Jianxin Wang*, FangXiang Wu, and Yi Pan. Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks. SCIENCE CHINA Life Sciences 2014, 57:1064–1071.
• Bolin Chen, Min Li, Jianxin Wang*, Fang-Xiang Wu. Disease gene identification by using graph kernels and Markov random fields. Sci China Life Sci, 2014, 57(11): 1054-1063.
• Bihai Zhao, Jianxin Wang*, Min Li, Fang-xiang Wu and Yi Pan. Detecting Protein Complex Based on Uncertain Graph Model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, 11(3): 486-497.
• Bihai Zhao, Jianxin Wang*, Min Li,, Fang-xiang Wu, Yi Pan. Prediction of essential proteins based on overlapping essential modules. IEEE Transactions on Nanobioscience, 2014,13(4):1-10. DOI (identifier) 10.1109/TNB.2014.2337912.
• Bolin Chen, Jianxin Wang*, Min Li, and FangXiang Wu: Identifying disease genes by integrating multiple data sources, BMC Medical Genomics, 2014, 7(Suppl 2):S2.
• Gamage Upeksha Ganegoda, Jianxin Wang*, Fang-Xiang Wu, Min Li. Prediction of disease genes using tissue-specified gene-gene network. BMC Systems Biology, 2014, 8(Suppl 3):S3. doi:10.1186/1752-0509-8-S3-S3
• Wei Peng, Jianxin Wang*, Juan Cai, Lu Chen, Min Li, Fangxiang Wu. Improving protein function prediction using domain and protein complexes in PPI networks. BMC Systems Biology, 2014,8:35
• Jianxin Wang*, Peiqiang Tan, Jinyi Yao, Qilong Feng, Jianer Chen: On the Minimum Link-Length Rectilinear Spanning Path Problem: Complexity and Algorithms. IEEE Trans. Computers 63(12): 3092-3100(2014)
• Weizhong Luo, Jianxin Wang*, Jiong Guo, Jianer Chen: Parameterized complexity of Max-lifetime Target Coverage in wireless sensor networks. Theor. Comput. Sci. 518: 32-41 (2014)
• Qilong Feng, Jianxin Wang*, Jianer Chen: Matching and Weighted P2-Packing: Algorithms and Kernels. Theor. Comput. Sci. 522: 85-94 (2014)
• Feng Shi, Jianxin Wang*, Jianer Chen, Qilong Feng, Jiong Guo: Algorithms for parameterized maximum agreement forest problem on multiple trees. Theor. Comput. Sci. 554: 207-216 (2014)
• Qilong Feng, Jianxin Wang*, Chao Xu, Jinyi Yao, Jianer Chen: Improved parameterized algorithms for minimum link-length rectilinear spanning path problem. Theor. Comput. Sci. 560: 158-171 (2014)
• Xiwei Tang ,Jianxin Wang* ,Jiancheng Zhong , Yi Pan. Predicting essential proteins based on weighted degree centrality. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, 11(2): 407-418.
• Jianxin Wang*, Xiaoqing Peng, Wei Peng, FangXiang Wu. Dynamic protein interaction network construction and applications. Proteomics, 2014, 14(4-5): 338-352.
• Ion I Mandoiu, Jianxin Wang*, Alexander Zelikovsky. Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(6): 1345-1346.
• Jianxin Wang*, Min Li, Xiaoqing Peng, Yi Pan. Identifying Protein Complexes from Protein–Protein Interaction Networks. Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics, 2013: 377-392.
• Jiancheng Zhong, Jianxin Wang*, Wei Peng, Zhen Zhang, Yi Pan. Prediction of essential proteins based on gene expression programming. BMC genomics, 2013, 14(Suppl 4): S7.
• Qingfeng Chen, Wei Lan, Jianxin Wang*. Mining featured patterns of MiRNA interaction based on sequence and structure similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(2): 415-422.
• Min Li, Xuehong Wu, Yi Pan, and Jianxin Wang*. hF-measure: a new measurement for evaluating clusters from protein interaction networks, PROTEOMICS, 2013, 13(2):291-300.
• Jianxin Wang, Yongjie Yang, Jiong Guo, Jianer Chen, Planar graph vertex partition for linear problem kernels, Journal of Computer and System Sciences, 2013, 79(5):609-621.
• Jianxin Wang*, Weizhong Luo, Qilong Feng, Jiong Guo，Jianer Chen, Improved Linear Problem Kernel for Planar Connected Dominating Set. Theoretical Computer Science, 2013, 511: 2-12.
• Jianxin Wang*, Weizhong Luo, Qilong Feng, Jiong Guo, Parameterized complexity of Min-power multicast problems in wireless ad hoc networks. Theoretical Computer Science, 2013, 508: 16-25.
• Yunlong Liu, Jianxin Wang*, Jiong Guo, Jianer Chen, Complexity and parameterized algorithms for cograph editing. Theoretical Computer Science, 2012, 461:45-54.
• Jianxin Wang*, Wei Peng, FangXiang Wu. Computational approaches to predicting essential proteins: a survey. PROTEOMICS-Clinical Applications, 2013, 7(1-2): 181-192.
• Min Li,Jianxin Wang*, Huan Wang, and Yi Pan. Identification of Essential Proteins from Weighted Protein Interaction Networks. J Bioinform Comput Biol 11(3): 1341002, 2013.
• Jun Ren, Jianxin Wang*, Min Li, Lusheng Wang. Identifying protein complexes based on density and modularity in Protein-Protein Interaction Network. BMC Systems Biology. 2013, 7(Suppl 4):S12
• Jianxin Wang*, Xiaoqing Peng, Min Li, Yi Pan. Construction and application of dynamic protein interaction network based on time course gene expression data. PROTEOMICS, 2013, 13(2):301-312.
• Jianxin Wang*, Xiaoqing Peng, Qianghua Xiao, Min Li and Yi Pan. An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation. BMC Systems Biology, 2013, 7:28
• Jianxin Wang*, Yuannan Huang, Fang-xiang Wu, Yi Pan, Symmetry compression method for discovering network motifs, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012
• Jianxin Wang*, Xiaoqing Peng, Min Li, Yong Luo, Yi Pan, Active Protein Interaction Network Construction and Protein Complex Detection, PROTEOMICS, 2013, 13(2):301-312.
• Li-Ping Tian, Jianxin Wang, Fang-Xiang Wu. Robust and Global Delay-dependent Stability for Genetic Regulatory Networks with Parameter Uncertainties, IEEE Transaction on Nanobioscience, 2012, 11(3):251-258.
• Weipeng, Jianxin Wang*, Weiping Wang, Qing Liu, Fang-xiang Wu, Yi Pan, Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks, BMC Systems Biology 6 (1), 87
• Min Li, Xuhong Wu, Jianxin Wang, Yi Pan, Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data, BMC bioinformatics 13 (1), 109
• Min Li, Hanhui Zhang, Jianxin Wang and Yi Pan, A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data, BMC Systems Biology, BMC Systems Biology 6 (1), 15
• Jianxin Wang*, Min Li, Huan Wang, Yi Pan, Identification of Essential Proteins Based on Edge Clustering Coefficient, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 9(4):1070-1080.
• Jianxin Wang*, Gang Chen, Binbin Liu, Min Li, Yi Pan, Identifying Protein Complexes from Interactome Based on Essential Proteins and Local Fitness Method, IEEE Transaction on Nanobioscience, 2012, 99: 1-9.
• Jianxin Wang*, Min Li, Jianer Chen, Yi Pan. A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics,2011,8(3):607-620.
• Jianxin Wang*, Binbin Liu, Min Li, Yi Pan. Identifying protein complexes from interaction networks based on clique percolation and distance restriction. BMC Genomics, 2010,11 (Suppl.2):S10.
• Jianxin Wang*, Gang Chen, Min Li, Yi Pan. Integration of breast cancer gene signatures based on graph centrality. BMC Systems Biology, 5(Suppl 3):S10, 2011.
• Xiwei Tang, Jianxin Wang*, Binbin Liu, Min Li, Gang Chen, Yi Pan. A comparison of the functional modules identified from time course and static PPI network data. BMC Bioinformatics 12: 339, 2011.
• Min Li, Jianxin Wang*, Xiang Chen, Huan Wang, Yi Pan. A local average connectivity-based method for identifying essential proteins from the network level. Computational Biology and Chemistry 35(3): 143-150, 2011.
• Jianxin Wang*, Qilong Feng, Jianer Chen, An O*(3.533k)-time parameterized algorithm for the 3-set packing problem, Theoretical Computer Science, 2011, 412(18): 1745-1753.
• Jianer Chen, Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang*, Improved deterministic algorithms for weighted matching and packing problems, Theoretical Computer Science, 2011, 412(23): 2503-2512.
• Jianxin Wang*, Min Li, Youping Deng, Yi Pan. Recent advances in clustering methods for protein interaction networks. BMC Genomics, 11(Suppl. 3):S10, 2010.
• Jianxin Wang*, Wenjun Li, Jianer Chen, A parameterized algorithm for the hyperplane-cover problem, Theoretical Computer Science, 2010, 411(44-46):4005-4009.
• Jingli Wu, Jianxin Wang*, Jian’er Chen. A parthenogenetic algorithm for single individual SNP haplotyping. Engineering Applications of Artificial Intelligence, 22(3): 401-406, 2009.
• Yunlong Liu, Jianer Chen, Jianxin Wang*, On Counting 3-D Matchings of Size k, Algorithmica, 2009, 54(4): 530-543.
• Minzhu Xie, Jianxin Wang, Jianer Chen, A Model of Higher Accuracy for the Individual Haplotyping Problem Based on Weighted SNP Fragments and Genotype with Errors，ISMB2008，Bioinformatics, i105-i113
• Jianxin Wang, and Qilong Feng, Introduction to the Parameterized Computation, Science Press, 2014.
• Jianxin Wang, Congestion Control in Computer Networks: Theory, Protocols and Applications, Nova Science Publishers, USA, 2010.12
• Jianxin Wang, Chee-Keng Yap: Frontiers in Algorithmics - 9th International Workshop, FAW 2015, Guilin, China, July 3-5, 2015, Proceedings. Lecture Notes in Computer Science 9130, Springer 2015, ISBN 978-3-319-19646-6
• Jianer Chen, John E. Hopcroft, Jianxin Wang: Frontiers in Algorithmics - 8th International Workshop, FAW 2014, Zhangjiajie, China, June 28-30, 2014. Proceedings. Lecture Notes in Computer Science 8497, Springer 2014, ISBN 978-3-319-08015-4
• Mitra Basu, Yi Pan, Jianxin Wang: Bioinformatics Research and Applications - 10th International Symposium, ISBRA 2014, Zhangjiajie, China, June 28-30, 2014. Proceedings.Lecture Notes in Computer Science 8492, Springer 2014, ISBN 978-3-319-08170-0
• Leonidas G. Bleris, Ion I. Mandoiu, Russell Schwartz, Jianxin Wang (Eds.): Bioinformatics Research and Applications - 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings. Lecture Notes in Computer Science 7292 Springer 2012, ISBN 978-3-642-30190-2
• Jianer Chen, Jianxin Wang, Alexander Zelikovsky (Eds.): Bioinformatics Research and Applications - 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011. Proceedings. Lecture Notes in Computer Science 6674 Springer 2011, ISBN 978-3-642-21259-8
• "Analysis of Connectivity for Sensor Networks Using Geometrical Probablity", in Handbook on Mobile and Ubiquitous Computing: Innovations and Perspectives edited by Evi Syukur, Laurence T. Yang and Seng Wai Loke, American Scientific Publishers, December 2006, invited
• 《Computer Networks》, Beijing University of Posts and Telecommunications Press，2004.
Refereed Journal Papers
• Junyang Bai, Weiping Wang, Yan Qin, Shigeng Zhang, Jianxin Wang and Yi Pan. BridgeTaint - A Bi-Directional Dynamic Taint Tracking Method for JavaScript Bridges in Android Hybrid Applications, IEEE Trans. Information Forensics and Security, 2019(14): 677-692
• Ying Yu, Min Li, Liangliang Liu, Zhihui Fei, Fang-Xiang Wu, Jianxin Wang*, Automatic ICD code Assignment of Chinese Clinical Notes based on Multilayer Attention BiRNN, Journal of Biomedical Informatics, 2019, in press
• Cheng Yan, Jianxin Wang*, Peng Ni, Wei Lan, Fangxiang Wu and Yi Pan. DNRLMF-MDA: predicting microRNA-disease associations based on similarities of micrornas and diseases. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017, DOI:10.1109/TCBB.2017.2776101,
• Yazhou Kong, Jianliang Gao, Yunpei Xu, Yi Pan, Jianxin Wang and Jin Liu. Classification of autism spectrum disorder by combining brain connectivity and deep neural network classifier, Neurocomputing, 2019(324): 63-68
• Min Zeng, Min Li, Zhihui Fei, Ying Yu, Yi Pan and Jianxin Wang. Automatic ICD-9 coding via deep transfer learning, Neurocomputing, 2019(324): 43-50
• Ruiqing Zheng, Min Li, Xiang Chen, Fang-Xiang Wu, Yi Pan and Jianxin Wang. BiXGBoost: a scalable, flexible boosting-based method for reconstructing gene regulatory networks. Bioinformatics. DOI: 10.1093/bioinformatics/bty908.
• Junwei Luo, Jianxin Wang*, Juan Shang , Huimin Luo , Min Li , Fangxiang Wu , Yi Pan, GapReduce: a gap filling algorithm based on partitioned read sets, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2789909
• Hui Jiang, Jianxin Wang*, Min Li, Wei Lan, Fangxiang Wu, and Yi Pan. miRTRS: A Recommendation Algorithm for Predicting miRNA Targets, IEEE/ACM transactions on computational biology and bioinformatics, 2018, doi: 10.1109/TCBB.2018.2873299
• Min Li, Li Tang, Zhongxiang Liao , Junwei Luo, Fangxiang Wu, Yi Pan, Jianxin Wang*, A novel scaffolding algorithm based on contig error correction and path extension, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2858267
• Gaoshi Li, Min Li, Jianxin Wang*, Yaohang Li , Yi Pan, United neighborhood closeness centrality and orthology for predicting essential proteins, IEEE/ACM Transactions on Computational Biology and Bioinformatics, doi 10.1109/TCBB.2018.2889978
• Xingyu Liao , Min Li , You Zou , Fangxiang Wu , Yi Pan , Feng Luo , Jianxin Wang*, Improving de novo assembly based on read classification, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2861380
• Tao Li, Xiankai Zhang, Feng Luo , Fangxiang Wu, Jianxin Wang*, MultiMotifMaker: a multi-thread tool for identifying DNA methylation motifs from Pacbio reads, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10.1109/TCBB.2018.2861399
• Binbin Wu, Min Li, Xingyu Liao , Junwei Luo , Fangxiang Wu , Yi Pan , Jianxin Wang*, MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2876855
• Min Li, Zhihui Fei, Min Zeng, Fangxiang Wu, Yaohang Li, Yi Pan, Jianxin Wang*, Automated ICD-9 Coding via A Deep Learning Approach, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2817488
• Peng Ni, Jianxin Wang*, Ping Zhong, Yaohang Li, Fangxiang Wu, Yi Pan, Constructing Disease Similarity Networks Based on Disease Module Theory, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2018.2817624
• Fang-Xiang Wu, Jianxin Wang, Min Li and Haiying Wang. Biomolecular Networks for Complex Diseases, Complexity, 2018(2018): 4210160:1-4210160:3
• Wei Jiang, Wanchun Jiang, Weiping Wang, Haodong Wang, Yi Pan and Jianxin Wang*. A fine-grained rule partition algorithm in cloud data centers, J. Network and Computer Applications, 2018(113): 14-25
• Jin Liu, Xiang Wang, Xiangrong Zhang, Yi Pan, Xiaosheng Wang and Jianxin Wang*. MMM - classification of schizophrenia using multi-modality multi-atlas feature representation and multi-kernel learning, Multimedia Tools Appl., 2018(77): 29651-29667
• Ping Zhang, Shaokai Wang, Kehua Guo and Jianxin Wang*. A secure data collection scheme based on compressive sensing in wireless sensor networks, Ad Hoc Networks, 2018(70): 73-84
• Hong Wang, Jianxin Wang* and Lifeng Zhou. A survival ensemble of extreme learning machine, Appl. Intell., 2018(48): 1846-1858
• Huimin Luo, Min Li, Shaokai Wang, Quan Liu, Yaohang Li and Jianxin Wang*. Computational drug repositioning using low-rank matrix approximation and randomized algorithms, Bioinformatics, 2018(34): 1904-1912
• Haibo Wang, Hongli Xu, Liusheng Huang, Jianxin Wang and Xuwei Yang. Load-balancing routing in software defined networks with multiple controllers, Computer Networks, 2018(141): 82-91
• Huixi Li, Wenjun Li, Qilong Feng, Shigeng Zhang, Haodong Wang and Jianxin Wang*. Leveraging content similarity among VMI files to allocate virtual machines in cloud, Future Generation Comp. Syst., 2018(79): 528-542
• Huixi Li, Wenjun Li, Haodong Wang and Jianxin Wang*. An optimization of virtual machine selection and placement by using memory content similarity for server consolidation in cloud, Future Generation Comp. Syst., 2018(84): 98-107
• Pingping Dong, Wenjun Yang, Wensheng Tang, Jiawei Huang, Haodong Wang, Yi Pan and Jianxin Wang*. Reducing transport latency for short flows with multipath TCP, J. Network and Computer Applications, 2018(108): 20-36
• Zhi-Zhong Chen, Qilong Feng, Chao Shen, Jianxin Wang* and Lusheng Wang. Algorithms for Pedigree Comparison, IEEE/ACM Trans. Comput. Biology Bioinform., 2018(15): 422-431
• Jianliang Gao, Jianxin Wang*, Ping Zhong and Haodong Wang. On Threshold-Free Error Detection for Industrial Wireless Sensor Networks, IEEE Trans. Industrial Informatics, 2018(14): 2199-2209
• Sujun Li, Weiping Wang, Boqing Zhou, Jianxin Wang*, Yun Cheng and Jie Wu. A (M, m) Authentication Scheme Against Mobile Sink Replicated Attack in Unattended Sensor Networks, IEEE Wireless Commun. Letters, 2018(7): 250-253
• Ping Zhang, Jianxin Wang, Kehua Guo, Fan Wu and Geyong Min. Multi-functional secure data aggregation schemes for WSNs, Ad Hoc Networks, 2018(69): 86-99
• Lianhai Liu, Jianxin Wang, Jiawei Huang and Qilong Feng. Encounter Prediction-based Data Forwarding for High Reliability in Bus Networks, Ad Hoc Sensor Wireless Networks, 2018(41): 137-164
• Min Li, Jie Yang, Fang-Xiang Wu, Yi Pan and Jianxin Wang. DyNetViewer - a Cytoscape app for dynamic network construction, analysis and visualization, Bioinformatics, 2018(34): 1597-1599
• Chengqian Lu, Mengyun Yang, Feng Luo, Fang-Xiang Wu, Min Li, Yi Pan, Yaohang Li and Jianxin Wang*. Prediction of lncRNA-disease associations based on inductive matrix completion, Bioinformatics, 2018(34): 3357-3364
• Lin Wu, Min Li, Jianxin Wang and Fang-Xiang Wu. CytoCtrlAnalyser - a Cytoscape app for biomolecular network controllability analysis, Bioinformatics, 2018(34): 1428-1430
• Jianliang Gao, Bo Song, Xiaohua Hu, Fengxia Yan and Jianxin Wang. ConnectedAlign - a PPI network alignment method for identifying conserved protein complexes across multiple species, BMC Bioinformatics, 2018(19): 129-135
• Hui Liu, Jiazhi Xia, Jianer Chen and Jianxin Wang*. Detection of hierarchical intrinsic symmetry structure in 3D models, Computers & Graphics, 2018(70): 8-16
• Ping Zhang, Jianxin Wang* and Kehua Guo. Compressive sensing and random walk based data collection in wireless sensor networks, Computer Communications, 2018(129): 43-53
• Wanchun Jiang, Fengyuan Ren and Jianxin Wang*. Survey on link layer congestion management of lossless switching fabric, Computer Standards & Interfaces, 2018(57): 31-35
• Haosu Zhou, Jianxin Wang*, Peixin Zhang and Tian Ban. A constant false alarm rate frame detector for satellite-based automatic identification system, Int. J. Satellite Communications Networking, 2018(36): 1-13
• Yuping Ke, Yixin Cao, Xiating Ouyang, Wenjun Li and Jianxin Wang. Unit interval vertex deletion - Fewer vertices are relevant, J. Comput. Syst. Sci., 2018(95): 109-121
• Feng Shi, Jianer Chen, Qilong Feng and Jianxin Wang*. A parameterized algorithm for the Maximum Agreement Forest problem on multiple rooted multifurcating trees, J. Comput. Syst. Sci., 2018(97): 28-44
• Jin Liu, Min Li, Wei Lan, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network, IEEE/ACM Trans. Comput. Biology Bioinform., 2018(15): 624-632
• Jin Liu, Jianxin Wang*, Zhenjun Tang, Bin Hu, Fang-Xiang Wu and Yi Pan. Improving Alzheimer's Disease Classification by Combining Multiple Measures, IEEE/ACM Trans. Comput. Biology Bioinform, 2018(15): 1649-1659
• Qilong Feng, Neng Huang, Xiong Jiang and Jianxin Wang*. Dealing with several parameterized problems by random methods, Theor. Comput. Sci., 2018(734): 94-104
• Qilong Feng, Shaohua Li, Zeyang Zhou and Jianxin Wang*. Parameterized algorithms for Edge Biclique and related problems, Theor. Comput. Sci., 2018(734): 105-118
• Yalong Xiao, Shigeng Zhang, Jianxin Wang and Chengzhang Zhu. A Novel Indoor Localization Algorithm for Efficient Mobility Management in Wireless Networks, Wireless Communications and Mobile Computing, 2018(2018): 9517942:1-9517942:12
• Yongjie Yang and Jianxin Wang*. Parameterized Complexity of Multi-winner Determination - More Effort Towards Fixed-Parameter Tractability, AAMAS, 2018: 2142-2144
• Tao Zhang, Jiawei Huang, Jianxin Wang*, Jianer Chen, Yi Pan and Geyong Min. Designing Fast and Friendly TCP to Fit High Speed Data Center Networks, ICDCS, 2018: 43-53
• Yongjie Yang and Jianxin Wang*. Multiwinner Voting with Restricted Admissible Sets - Complexity and Strategyproofness, IJCAI, 2018: 576-582
• Jinbin Hu, Jiawei Huang, Wenjun Lv, Yutao Zhou, Jianxin Wang* and Tian He. CAPS - Coding-based Adaptive Packet Spraying to Reduce Flow Completion Time in Data Center, INFOCOM, 2018: 2294-2302
• Canshang Deng, Qingfeng Chen, Zhixian Liu, Ruiqing Zheng, Jin Liu, Jianxin Wang and Wei Lan. KSIBW - Predicting Kinase-Substrate Interactions Based on Bi-random Walk, ISBRA, 2018: 151-162
• Zhen Zhang, Jianxin Wang*, Junwei Luo, Juan Shang, Min Li, Fang-Xiang Wu and Yi Pan. Sprites2 - Detection of Deletions Based on an Accurate Alignment Strategy, ISBRA, 2018: 139-150
• Guangwei Wu, Jianer Chen and Jianxin Wang*. On Scheduling Two-Stage Jobs on Multiple Two-Stage Flowshops, CoRR, 2018(abs/1801.09089)
• Min Li, Peng Ni , Xiaopei Chen , Jianxin Wang* , Fangxiang Wu , Yi Pan, Construction of refined protein interaction network for predicting essential proteins, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2017.2665482
• Min Li, Ruiqing Zheng, Yaohang Li, Fang-Xiang Wu, and Jianxin Wang*. MGT-SM: A Method for Constructing Cellular Signal Transduction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI: 10.1109/TCBB.2017.2705143
• Jin Liu, Jianxin Wang*, Bin Hu, Fang-Xiang Wu, and Yi Pan. Alzheimer’s Disease Classification Based on Individual Hierarchical Networks Constructed with 3D Texture Features. IEEE Transactions on NanoBioscience, 16(6): 428-437. 2017
• Min Li , Xiangmao Meng , Ruiqing Zheng , Fang-Xiang Wu , Yaohang Li , Yi Pan , Jianxin Wang, Identification of protein complexes by using a spatial and temporal active protein interaction network, IEEE/ACM Transactions on Computational Biology and Bioinformatics, DOI: 10.1109/TCBB.2017.2749571
• Jin Liu, Min Li, Yi Pan, Fang-Xiang Wu, and Jianxin Wang*. Classification of Schizophrenia Based on Individual Hierarchical Brain Networks Constructed From Structural MRI Images. IEEE Transactions on NanoBioscience, 16(7): 600-608. 2017
• Hai Yu, Siming Wan, Xiaobo Zhou, Jin Wang, Yongpeng Wu, Feng Shu, Jiangzhou Wang and Jianxin Wang. GPI-based Secrecy Rate Maximization Beamforming Scheme for Wireless Transmission with AN-aided Directional Modulation, CoRR, 2017(abs/1711.06463)
• Hai Yu, Feng Shu, You You, Jin Wang, Tingting Liu, Xiaohu You, Jinhui Lu, Jianxin Wang and Xiaohua Zhu. Compressed sensing-based time-domain channel estimator for full-duplex OFDM systems with IQ-imbalances, SCIENCE CHINA Information Sciences, 2017(60): 82303
• Guan Wang, Yu Sun and Jianxin Wang*. Automatic Image-Based Plant Disease Severity Estimation Using Deep Learning, Comp. Int. and Neurosc., 2017(2017): 2917536:1-2917536:8
• Yalong Xiao, Shigeng Zhang, Jiannong Cao, Haodong Wang and Jianxin Wang*. Exploiting distribution of channel state information for accurate wireless indoor localization, Computer Communications, 2017(114): 73-83
• Sujun Li, Weiping Wang, Boqing Zhou, Jianxin Wang, Yun Cheng and Jie Wu. A Secure Scheme for Heterogeneous Sensor Networks, IEEE Wireless Commun. Letters, 2017(6): 182-185
• Yalong Xiao, Jianxin Wang, Shigeng Zhang, Haodong Wang and Jiannong Cao. Accurate Indoor Localization with Multiple Feature Fusion, WASA, 2017: 522-533
• Xiaoqing Peng, Jianxin Wang*, Wei Peng, Fang-Xiang Wu and Yi Pan. Protein-protein interactions - detection, reliability assessment and applications, Briefings in Bioinformatics, 2017(18): 798-819
• Wei Lan, Min Li, Kaijie Zhao, Jin Liu, Fang-Xiang Wu, Yi Pan and Jianxin Wang*. LDAP - a web server for lncRNA-disease association prediction, Bioinformatics, 2017(33): 458-460
• Junwei Luo, Jianxin Wang*, Zhen Zhang, Min Li and Fang-Xiang Wu. BOSS - a novel scaffolding algorithm based on an optimized scaffold graph, Bioinformatics, 2017(33): 169-176
• Min Li, Ping Huang, Xiaodong Yan, Jianxin Wang*, Yi Pan and Fang-Xiang Wu. VAliBS - a visual aligner for bisulfite sequences, BMC Bioinformatics, 2017(18): 91-98
• Min Li, Binbin Wu, Xiaodong Yan, Junwei Luo, Yi Pan, Fang-Xiang Wu and Jianxin Wang*. PECC - Correcting contigs based on paired-end read distribution, Computational Biology and Chemistry, 2017(69): 178-184
• Jin Liu, Min Li, Yi Pan, Wei Lan, Ruiqing Zheng, Fang-Xiang Wu and Jianxin Wang*. Complex Brain Network Analysis and Its Applications to Brain Disorders - A Survey, Complexity, 2017(2017): 8362741:1-8362741:27
• Cheng Yan, Jianxin Wang*, Wei Lan, Fang-Xiang Wu and Yi Pan. SDTRLS - Predicting Drug-Target Interactions for Complex Diseases Based on Chemical Substructures, Complexity, 2017(2017): 2713280:1-2713280:10
• Yaoxue Zhang, Kehua Guo, Ju Ren, Yuezhi Zhou, Jianxin Wang* and Jianer Chen. Transparent Computing - A Promising Network Computing Paradigm, Computing in Science and Engineering, 2017(19): 7-20
• Wenjun Li, Yixin Cao, Jianer Chen and Jianxin Wang*. Deeper local search for parameterized and approximation algorithms for maximum internal spanning tree, Inf. Comput., 2017(252): 187-200
• Xiaoshu Zhu, Jie Qiu, Miao Xie and Jianxin Wang*. A multi-objective biclustering algorithm based on fuzzy mathematics, Neurocomputing, 2017(253): 177-182
• Wen Xue, Tian Ban and Jianxin Wang. A modified normalized min-sum algorithm for LDPC decoding using order statistics, Int. J. Satellite Communications Networking, 2017(35): 163-175
• Chang Ruan, Jianxin Wang*, Wanchun Jiang, Jiawei Huang, Geyong Min and Yi Pan. FSQCN - Fast and simple quantized congestion notification in data center ethernet, J. Network and Computer Applications, 2017(83): 53-62
• Jiawei Huang, Qi Li, Shaohua Zhong, Lianhai Liu, Ping Zhong, Jianxin Wang* and Jin Ye. Synthesizing Existing CSMA and TDMA Based MAC Protocols for VANETs, Sensors, 2017(17): 338
• Mitra Basu, Yi Pan and Jianxin Wang. Guest Editors Introduction to the Special Section on ISBRA 2014, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 314-315
• Min Li, Zhongxiang Liao, Yiming He, Jianxin Wang*, Junwei Luo and Yi Pan. ISEA - Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 916-925
• Jiancheng Zhong, Jianxin Wang*, Xiaojun Ding, Zhen Zhang, Min Li, Fang-Xiang Wu and Yi Pan. Protein Inference from the Integration of Tandem MS Data and Interactome Networks, IEEE/ACM Trans. Comput. Biology Bioinform., 2017(14): 1399-1409
• Jianer Chen, Chao Xu and Jianxin Wang*. Dealing with 4-variables by resolution - An improved MaxSAT algorithm, Theor. Comput. Sci., 2017(670): 33-44
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Jianer Chen, Yi Pan and Geyong Min. Tuning the Aggressive TCP Behavior for Highly Concurrent HTTP Connections in Intra-Datacenter, IEEE/ACM Trans. Netw., 2017(25): 3808-3822
• Wanchun Jiang, HaiMing Xie, Xiangqian Zhou, Liyuan Fang and Jianxin Wang*. Performance Analysis and Improvement of Replica Selection Algorithms for Key-Value Stores, CLOUD, 2017: 786-789
• Yongjie Yang and Jianxin Wang*. Anyone But Them - The Complexity Challenge for A Resolute Election Controller, AAMAS, 2017: 1133-1141
• Binbin Wu, Jianxin Wang*, Junwei Luo, Min Li, Fang-Xiang Wu and Yi Pan. MEC - Misassembly error correction in contigs using a combination of paired-end reads and GC-contents, BIBM, 2017: 216-221
• Wanchun Jiang, Liyuan Fang, HaiMing Xie, Xiangqian Zhou and Jianxin Wang. Tars - Timeliness-Aware Adaptive Replica Selection for Key-Value Stores, ICCCN, 2017: 1-9
• Sen Liu, Jiawei Huang, Yutao Zhou, Jianxin Wang and Tian He. Task-aware TCP in Data Center Networks, ICDCS, 2017: 1356-1366
• Shaojun Zou, Jiawei Huang, Yutao Zhou, Jianxin Wang* and Tian He. Flow-Aware Adaptive Pacing to Mitigate TCP Incast in Data Center Networks, ICDCS, 2017: 2119-2124
• Shigeng Zhang, Xuan Liu, Jianxin Wang and Jiannong Cao. Tag size profiling in multiple reader RFID systems, INFOCOM, 2017: 1-9
• Wessam Elhefnawy, Min Li, Jianxin Wang and Yaohang Li. Construction of Protein Backbone Fragments Libraries on Large Protein Sets Using a Randomized Spectral Clustering Algorithm, ISBRA, 2017: 108-119
• Peng Ni, Min Li, Ping Zhong, Guihua Duan, Jianxin Wang, Yaohang Li and Fang-Xiang Wu. Relating Diseases Based on Disease Module Theory, ISBRA, 2017: 24-33
• Shaohua Li, Qilong Feng, Xiangzhong Meng and Jianxin Wang*. An Improved FPT Algorithm for the Flip Distance Problem, MFCS, 2017: 65:1-65:13
• Wanchun Jiang, Liyuan Fang, HaiMing Xie, Xiangqian Zhou and Jianxin Wang. Tars - Timeliness-aware Adaptive Replica Selection for Key-Value Stores, CoRR, 2017(abs/1702.08172)
• Wenjun Li, Jianxin Wang and Yongjie Yang. Improved Kernels and Algorithms for Claw and Diamond Free Edge Deletion Based on Refined Observations, CoRR, 2017(abs/1707.06779)
• Peng, Wei, Jianxin Wang*, Zhen Zhang, and Fang-Xiang Wu. "Applications of Random Walk Model on Biological Networks." Current Bioinformatics 11, no. 2 (2016): 211-220.
• Min Li, Zhongxiang Liao, Yiming He, Jianxin Wang*, Junwei Luo, and Yi Pan. ISEA: iterative seed-extension algorithm for de novo assembly using paired-end information and insert size distribution. IEEE/ACM Transactions on Computational Biology and Bioinformatics. DOI 10.1109/TCBB.2016.2550433, 2016
• Huimin Luo, Jianxin Wang*, Min Li, Junwei Luo, Xiaoqing Peng, Fangxiang Wu, Yi Pan. Drug repositioning based on comprehensive similarity measures and Bi-Random Walk algorithm. Bioinformatics. DOI 10.1093/bioinformatics/btw228, 2016
• Bihai Zhao, Jianxin Wang*, Min Li, Xueyong Li, Yaohang Li, Fang-Xiang Wu, Yi Pan. A new method for predicting protein functions from dynamic weighted interactome networks, IEEE Transactions on Nanobioscience. DOI: 10.1109/TNB.2016.2536161, 2016
• Sheng-You Huang, Min Li, Jianxin Wang*, and Yi Pan. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. DOI: 10.1021/acs.jcim.5b00275. 2015
• Yu Tang, Min Li, Jianxin Wang, Yi Pan, Fang-Xiang Wu. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72.
• Junwei Luo, Jianxin Wang*, Weilong Li, Zhen Zhang, Fang-Xiang Wu, Min Li and Yi Pan. EPGA2: memory-efficien de novo assembler, Bioinformatics, 31(24), 3988-3990, 2015.
• Junwei Luo, Jianxin Wang* , Zhen Zhang, Fang-Xiang Wu, Min Li, and Yi Pan. EPGA: de novo assembly using the distributions of reads and insert size. Bioinformatics, 2015, 31(6):825-333.
• Wei Peng, Jianxin Wang* ,Bihai Zhao, Lusheng Wang. Identification of protein complexes using weighted PageRank-Nibble algorithm and core-attachment structure. Computational Biology and Bioinformatics, IEEE/ACM Transactions on, 2015, 12(1): 179-192.
• Min Li, Yu Lu, Jianxin Wang*, Fang-Xiang Wu, Yi Pan. A topology potential-based method for identifying essential proteins from PPI networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015, 12(2): 372-383.
• Yu Tang, Min Li, Jianxin Wang*, Yi Pan, Fang-Xiang Wu. CytoNCA: a cytoscape plugin for centrality analysis and evaluation of biological networks. BioSystems, 2015, 127: 67-72.
• Sheng-You Huang, Min Li, Jianxin Wang*, and Yi Pan. HybridDock: a hybrid protein-ligand docking protocol integrating protein- and ligand-based approaches. J. Chem. Inf. Model. DOI: 10.1021/acs.jcim.5b00275. 2015
• Jianxin Wang*, Jiancheng Zhong, Gang Chen, Min Li, Yi Pan,ClusterViz: a Cytoscape APP for Clustering Analysis of Biological Network. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2015,12(4):815-22.
• Xiaoqing Peng, Jianxin Wang*, Zhen Zhang, Qianghua Xiao, Min Li, and Yi Pan. Re-alignment of the unmapped reads with base quality score. BMC Bioinformatics, 2015, 16(Suppl 5):S8
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Yi Huang, Jianer Chen, Yi Pan: Adaptive-Acceleration Data Center TCP. IEEE Trans. Computers 64(6): 1522-1533 (2015)
• Yunlong Liu, Jianxin Wang*, Jie You, Jianer Chen, Yixin Cao: Edge deletion problems: Branching facilitated by modular decomposition. Theor. Comput. Sci. 573: 63-70 (2015)
• Tao Zhang, Jianxin Wang*, Jiawei Huang, Yi Huang, Jianer Chen, Yi Pan: Adaptive-Acceleration Data Center TCP. IEEE Trans. Computers 64(6): 1522-1533 (2015)
• Zhuofan Liao,Jianxin Wang*,Shigeng Zhang,Jiannong Cao,Geyong Min. Minimizing movement for target coverage and network connectivity in mobile sensor networks. IEEE Transactions on Parallel and Distributed Systems, 2015, 26(7): 1971-1983.
• Shigeng Zhang, Xuan Liu, Jianxin Wang*, Jiannong Cao, Geyong Min. Accurate range-free localization for anisotropic wireless sensor networks. ACM Transactions on Sensor Networks, 2015, 11(3): 51.
• Lin Chen, Jianxin Wang*, Xiaoqin Peng, Xiaoyan Kui. An energy-efficient and relay hop bounded mobile data gathering algorithm in wireless sensor networks. International Journal of Distributed Sensor Networks, 2015, 2015: 12.
• Pingping Dong, Jianxin Wang*,Haodong Wang,Yi Pan.Boosting VoIP capacity via service differentiation in IEEE 802.11 e EDCA networks. International Journal of Distributed Sensor Networks, 2015, 2015: 4.
• Boqing Zhou, Jianxin Wang*,Sujun Li,Weiping Wang .A new key predistribution scheme for multiphase sensor networks using a new deployment model. Journal of Sensors, 2014, 2014.
• Min Li, Ruiqing Zheng, Hanhui Zhang, Jianxin Wang*, and Yi Pan. Effective identification of essential proteins based on priori knowledge, network topology and gene expressions. Methods, 2014,67(3):325-333. doi: 10.1016/j.ymeth.2014.02.016 (SCI, Impact factor:4.159) Jun 1 ESI Top1%
• Min Li, Jiayi Zhang, Qing Liu, Jianxin Wang*, Fang-Xiang Wu. Prediction of disease-related genes based on weighted tissue-specific network by using DNA methylation. BMC Medical Genomics, 2014, 7(Suppl 2):S4.
• Min Li, Qi Li, Gamage Upeksha Ganegoda, Jianxin Wang*, FangXiang Wu, and Yi Pan. Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks. SCIENCE CHINA Life Sciences 2014, 57:1064–1071.
• Bolin Chen, Min Li, Jianxin Wang*, Fang-Xiang Wu. Disease gene identification by using graph kernels and Markov random fields. Sci China Life Sci, 2014, 57(11): 1054-1063.
• Bihai Zhao, Jianxin Wang*, Min Li, Fang-xiang Wu and Yi Pan. Detecting Protein Complex Based on Uncertain Graph Model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, 11(3): 486-497.
• Bihai Zhao, Jianxin Wang*, Min Li,, Fang-xiang Wu, Yi Pan. Prediction of essential proteins based on overlapping essential modules. IEEE Transactions on Nanobioscience, 2014,13(4):1-10. DOI (identifier) 10.1109/TNB.2014.2337912.
• Bolin Chen, Jianxin Wang*, Min Li, and FangXiang Wu: Identifying disease genes by integrating multiple data sources, BMC Medical Genomics, 2014, 7(Suppl 2):S2.
• Gamage Upeksha Ganegoda, Jianxin Wang*, Fang-Xiang Wu, Min Li. Prediction of disease genes using tissue-specified gene-gene network. BMC Systems Biology, 2014, 8(Suppl 3):S3. doi:10.1186/1752-0509-8-S3-S3
• Wei Peng, Jianxin Wang*, Juan Cai, Lu Chen, Min Li, Fangxiang Wu. Improving protein function prediction using domain and protein complexes in PPI networks. BMC Systems Biology, 2014,8:35
• Jianxin Wang*, Peiqiang Tan, Jinyi Yao, Qilong Feng, Jianer Chen: On the Minimum Link-Length Rectilinear Spanning Path Problem: Complexity and Algorithms. IEEE Trans. Computers 63(12): 3092-3100(2014)
• Weizhong Luo, Jianxin Wang*, Jiong Guo, Jianer Chen: Parameterized complexity of Max-lifetime Target Coverage in wireless sensor networks. Theor. Comput. Sci. 518: 32-41 (2014)
• Qilong Feng, Jianxin Wang*, Jianer Chen: Matching and Weighted P2-Packing: Algorithms and Kernels. Theor. Comput. Sci. 522: 85-94 (2014)
• Feng Shi, Jianxin Wang*, Jianer Chen, Qilong Feng, Jiong Guo: Algorithms for parameterized maximum agreement forest problem on multiple trees. Theor. Comput. Sci. 554: 207-216 (2014)
• Qilong Feng, Jianxin Wang*, Chao Xu, Jinyi Yao, Jianer Chen: Improved parameterized algorithms for minimum link-length rectilinear spanning path problem. Theor. Comput. Sci. 560: 158-171 (2014)
• Xiwei Tang ,Jianxin Wang* ,Jiancheng Zhong , Yi Pan. Predicting essential proteins based on weighted degree centrality. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014, 11(2): 407-418.
• Jianxin Wang*, Xiaoqing Peng, Wei Peng, FangXiang Wu. Dynamic protein interaction network construction and applications. Proteomics, 2014, 14(4-5): 338-352.
• Ion I Mandoiu, Jianxin Wang*, Alexander Zelikovsky. Guest Editors' introduction to the special section on bioinformatics research and applications. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(6): 1345-1346.
• Jianxin Wang*, Min Li, Xiaoqing Peng, Yi Pan. Identifying Protein Complexes from Protein–Protein Interaction Networks. Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics, 2013: 377-392.
• Jiancheng Zhong, Jianxin Wang*, Wei Peng, Zhen Zhang, Yi Pan. Prediction of essential proteins based on gene expression programming. BMC genomics, 2013, 14(Suppl 4): S7.
• Qingfeng Chen, Wei Lan, Jianxin Wang*. Mining featured patterns of MiRNA interaction based on sequence and structure similarity. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(2): 415-422.
• Min Li, Xuehong Wu, Yi Pan, and Jianxin Wang*. hF-measure: a new measurement for evaluating clusters from protein interaction networks, PROTEOMICS, 2013, 13(2):291-300.
• Jianxin Wang, Yongjie Yang, Jiong Guo, Jianer Chen, Planar graph vertex partition for linear problem kernels, Journal of Computer and System Sciences, 2013, 79(5):609-621.
• Jianxin Wang*, Weizhong Luo, Qilong Feng, Jiong Guo，Jianer Chen, Improved Linear Problem Kernel for Planar Connected Dominating Set. Theoretical Computer Science, 2013, 511: 2-12.
• Jianxin Wang*, Weizhong Luo, Qilong Feng, Jiong Guo, Parameterized complexity of Min-power multicast problems in wireless ad hoc networks. Theoretical Computer Science, 2013, 508: 16-25.
• Yunlong Liu, Jianxin Wang*, Jiong Guo, Jianer Chen, Complexity and parameterized algorithms for cograph editing. Theoretical Computer Science, 2012, 461:45-54.
• Jianxin Wang*, Wei Peng, FangXiang Wu. Computational approaches to predicting essential proteins: a survey. PROTEOMICS-Clinical Applications, 2013, 7(1-2): 181-192.
• Min Li,Jianxin Wang*, Huan Wang, and Yi Pan. Identification of Essential Proteins from Weighted Protein Interaction Networks. J Bioinform Comput Biol 11(3): 1341002, 2013.
• Jun Ren, Jianxin Wang*, Min Li, Lusheng Wang. Identifying protein complexes based on density and modularity in Protein-Protein Interaction Network. BMC Systems Biology. 2013, 7(Suppl 4):S12
• Jianxin Wang*, Xiaoqing Peng, Min Li, Yi Pan. Construction and application of dynamic protein interaction network based on time course gene expression data. PROTEOMICS, 2013, 13(2):301-312.
• Jianxin Wang*, Xiaoqing Peng, Qianghua Xiao, Min Li and Yi Pan. An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation. BMC Systems Biology, 2013, 7:28
• Jianxin Wang*, Yuannan Huang, Fang-xiang Wu, Yi Pan, Symmetry compression method for discovering network motifs, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012
• Jianxin Wang*, Xiaoqing Peng, Min Li, Yong Luo, Yi Pan, Active Protein Interaction Network Construction and Protein Complex Detection, PROTEOMICS, 2013, 13(2):301-312.
• Li-Ping Tian, Jianxin Wang, Fang-Xiang Wu. Robust and Global Delay-dependent Stability for Genetic Regulatory Networks with Parameter Uncertainties, IEEE Transaction on Nanobioscience, 2012, 11(3):251-258.
• Weipeng, Jianxin Wang*, Weiping Wang, Qing Liu, Fang-xiang Wu, Yi Pan, Iteration method for predicting essential proteins based on orthology and protein-protein interaction networks, BMC Systems Biology 6 (1), 87
• Min Li, Xuhong Wu, Jianxin Wang, Yi Pan, Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data, BMC bioinformatics 13 (1), 109
• Min Li, Hanhui Zhang, Jianxin Wang and Yi Pan, A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data, BMC Systems Biology, BMC Systems Biology 6 (1), 15
• Jianxin Wang*, Min Li, Huan Wang, Yi Pan, Identification of Essential Proteins Based on Edge Clustering Coefficient, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 9(4):1070-1080.
• Jianxin Wang*, Gang Chen, Binbin Liu, Min Li, Yi Pan, Identifying Protein Complexes from Interactome Based on Essential Proteins and Local Fitness Method, IEEE Transaction on Nanobioscience, 2012, 99: 1-9.
• Jianxin Wang*, Min Li, Jianer Chen, Yi Pan. A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics,2011,8(3):607-620.
• Jianxin Wang*, Binbin Liu, Min Li, Yi Pan. Identifying protein complexes from interaction networks based on clique percolation and distance restriction. BMC Genomics, 2010,11 (Suppl.2):S10.
• Jianxin Wang*, Gang Chen, Min Li, Yi Pan. Integration of breast cancer gene signatures based on graph centrality. BMC Systems Biology, 5(Suppl 3):S10, 2011.
• Xiwei Tang, Jianxin Wang*, Binbin Liu, Min Li, Gang Chen, Yi Pan. A comparison of the functional modules identified from time course and static PPI network data. BMC Bioinformatics 12: 339, 2011.
• Min Li, Jianxin Wang*, Xiang Chen, Huan Wang, Yi Pan. A local average connectivity-based method for identifying essential proteins from the network level. Computational Biology and Chemistry 35(3): 143-150, 2011.
• Jianxin Wang*, Qilong Feng, Jianer Chen, An O*(3.533k)-time parameterized algorithm for the 3-set packing problem, Theoretical Computer Science, 2011, 412(18): 1745-1753.
• Jianer Chen, Qilong Feng, Yang Liu, Songjian Lu, Jianxin Wang*, Improved deterministic algorithms for weighted matching and packing problems, Theoretical Computer Science, 2011, 412(23): 2503-2512.
• Jianxin Wang*, Min Li, Youping Deng, Yi Pan. Recent advances in clustering methods for protein interaction networks. BMC Genomics, 11(Suppl. 3):S10, 2010.
• Jianxin Wang*, Wenjun Li, Jianer Chen, A parameterized algorithm for the hyperplane-cover problem, Theoretical Computer Science, 2010, 411(44-46):4005-4009.
• Jingli Wu, Jianxin Wang*, Jian’er Chen. A parthenogenetic algorithm for single individual SNP haplotyping. Engineering Applications of Artificial Intelligence, 22(3): 401-406, 2009.
• Yunlong Liu, Jianer Chen, Jianxin Wang*, On Counting 3-D Matchings of Size k, Algorithmica, 2009, 54(4): 530-543.
• Minzhu Xie, Jianxin Wang, Jianer Chen, A Model of Higher Accuracy for the Individual Haplotyping Problem Based on Weighted SNP Fragments and Genotype with Errors，ISMB2008，Bioinformatics, i105-i113